Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trbv20A0A0B4J1H5 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trbv20A0A0B4J1H5 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Trbv20A0A0B4J1H5 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC23.3■■□□□ 1.32
Trbv20A0A0B4J1H5 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trbv20A0A0B4J1H5 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Trbv20A0A0B4J1H5 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trbv20A0A0B4J1H5 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trbv20A0A0B4J1H5 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trbv20A0A0B4J1H5 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trbv20A0A0B4J1H5 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Trbv20A0A0B4J1H5 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trbv20A0A0B4J1H5 Gm43445-201ENSMUST00000198564 2091 ntBASIC23.26■■□□□ 1.31
Trbv20A0A0B4J1H5 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
Trbv20A0A0B4J1H5 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trbv20A0A0B4J1H5 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.24■■□□□ 1.31
Trbv20A0A0B4J1H5 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Trbv20A0A0B4J1H5 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trbv20A0A0B4J1H5 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trbv20A0A0B4J1H5 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trbv20A0A0B4J1H5 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trbv20A0A0B4J1H5 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trbv20A0A0B4J1H5 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trbv20A0A0B4J1H5 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Trbv20A0A0B4J1H5 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trbv20A0A0B4J1H5 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trbv20A0A0B4J1H5 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.18■■□□□ 1.3
Trbv20A0A0B4J1H5 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Trbv20A0A0B4J1H5 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Trbv20A0A0B4J1H5 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trbv20A0A0B4J1H5 Gm25238-201ENSMUST00000174914 89 ntBASIC23.15■■□□□ 1.3
Trbv20A0A0B4J1H5 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trbv20A0A0B4J1H5 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trbv20A0A0B4J1H5 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Trbv20A0A0B4J1H5 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Trbv20A0A0B4J1H5 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trbv20A0A0B4J1H5 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
Trbv20A0A0B4J1H5 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trbv20A0A0B4J1H5 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trbv20A0A0B4J1H5 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trbv20A0A0B4J1H5 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Trbv20A0A0B4J1H5 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Trbv20A0A0B4J1H5 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Trbv20A0A0B4J1H5 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Trbv20A0A0B4J1H5 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.01■■□□□ 1.27
Trbv20A0A0B4J1H5 Amer2-203ENSMUST00000225247 2662 ntBASIC23■■□□□ 1.27
Trbv20A0A0B4J1H5 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trbv20A0A0B4J1H5 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trbv20A0A0B4J1H5 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22.99■■□□□ 1.27
Trbv20A0A0B4J1H5 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trbv20A0A0B4J1H5 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
Trbv20A0A0B4J1H5 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.27
Trbv20A0A0B4J1H5 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC22.95■■□□□ 1.26
Trbv20A0A0B4J1H5 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trbv20A0A0B4J1H5 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.94■■□□□ 1.26
Trbv20A0A0B4J1H5 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trbv20A0A0B4J1H5 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Trbv20A0A0B4J1H5 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trbv20A0A0B4J1H5 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC22.91■■□□□ 1.26
Trbv20A0A0B4J1H5 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
Trbv20A0A0B4J1H5 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC22.9■■□□□ 1.26
Trbv20A0A0B4J1H5 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
Trbv20A0A0B4J1H5 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trbv20A0A0B4J1H5 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Trbv20A0A0B4J1H5 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
Trbv20A0A0B4J1H5 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Trbv20A0A0B4J1H5 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Trbv20A0A0B4J1H5 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Trbv20A0A0B4J1H5 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.88■■□□□ 1.25
Trbv20A0A0B4J1H5 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trbv20A0A0B4J1H5 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trbv20A0A0B4J1H5 Mipep-204ENSMUST00000225043 1548 ntBASIC22.87■■□□□ 1.25
Trbv20A0A0B4J1H5 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trbv20A0A0B4J1H5 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
Trbv20A0A0B4J1H5 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
Trbv20A0A0B4J1H5 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trbv20A0A0B4J1H5 Fezf2-202ENSMUST00000224023 1917 ntBASIC22.82■■□□□ 1.24
Trbv20A0A0B4J1H5 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trbv20A0A0B4J1H5 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Trbv20A0A0B4J1H5 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trbv20A0A0B4J1H5 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC22.81■■□□□ 1.24
Trbv20A0A0B4J1H5 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC22.78■■□□□ 1.24
Trbv20A0A0B4J1H5 Rab21-202ENSMUST00000218831 843 ntBASIC22.78■■□□□ 1.24
Trbv20A0A0B4J1H5 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22.77■■□□□ 1.24
Trbv20A0A0B4J1H5 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trbv20A0A0B4J1H5 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC22.72■■□□□ 1.23
Trbv20A0A0B4J1H5 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trbv20A0A0B4J1H5 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
Trbv20A0A0B4J1H5 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
Trbv20A0A0B4J1H5 AL845457.1-201ENSMUST00000197244 68 ntBASIC22.68■■□□□ 1.22
Trbv20A0A0B4J1H5 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trbv20A0A0B4J1H5 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Trbv20A0A0B4J1H5 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Trbv20A0A0B4J1H5 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms