Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC12.6□□□□□ -0.39
CLRN1P58418 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC12.6□□□□□ -0.39
CLRN1P58418 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC12.6□□□□□ -0.39
CLRN1P58418 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC12.6□□□□□ -0.39
CLRN1P58418 AC108725.1-201ENST00000495472 409 ntBASIC12.6□□□□□ -0.39
CLRN1P58418 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC12.6□□□□□ -0.39
CLRN1P58418 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC12.6□□□□□ -0.39
CLRN1P58418 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
CLRN1P58418 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC12.6□□□□□ -0.39
CLRN1P58418 MIR3615-201ENST00000581999 87 ntBASIC12.6□□□□□ -0.39
CLRN1P58418 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC12.6□□□□□ -0.39
CLRN1P58418 AL022334.2-201ENST00000610000 484 ntBASIC12.6□□□□□ -0.39
CLRN1P58418 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC12.6□□□□□ -0.39
CLRN1P58418 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC12.6□□□□□ -0.39
CLRN1P58418 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CLRN1P58418 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CLRN1P58418 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC12.6□□□□□ -0.39
CLRN1P58418 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 AC068760.1-201ENST00000493579 1953 ntBASIC12.6□□□□□ -0.39
CLRN1P58418 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC12.59□□□□□ -0.39
CLRN1P58418 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
CLRN1P58418 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.59□□□□□ -0.39
CLRN1P58418 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CLRN1P58418 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC12.59□□□□□ -0.39
CLRN1P58418 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC12.59□□□□□ -0.39
CLRN1P58418 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
CLRN1P58418 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
CLRN1P58418 RNA5SP359-201ENST00000364838 113 ntBASIC12.59□□□□□ -0.39
CLRN1P58418 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CLRN1P58418 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC12.59□□□□□ -0.39
CLRN1P58418 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC12.59□□□□□ -0.39
CLRN1P58418 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 ACTBP11-201ENST00000436287 1126 ntBASIC12.59□□□□□ -0.39
CLRN1P58418 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC12.59□□□□□ -0.39
CLRN1P58418 RHEB-207ENST00000496004 744 ntTSL 2 BASIC12.59□□□□□ -0.39
CLRN1P58418 CHCHD2P2-201ENST00000503744 321 ntBASIC12.59□□□□□ -0.39
CLRN1P58418 CFL1-212ENST00000531413 636 ntTSL 3 BASIC12.59□□□□□ -0.39
CLRN1P58418 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 AC093752.3-201ENST00000567343 901 ntBASIC12.59□□□□□ -0.39
CLRN1P58418 AC243960.2-201ENST00000600996 747 ntBASIC12.59□□□□□ -0.39
CLRN1P58418 AL451050.2-201ENST00000606967 682 ntBASIC12.59□□□□□ -0.39
CLRN1P58418 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 BRD7P5-201ENST00000299197 1822 ntBASIC12.59□□□□□ -0.39
CLRN1P58418 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.59□□□□□ -0.39
CLRN1P58418 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC12.59□□□□□ -0.39
CLRN1P58418 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
CLRN1P58418 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC12.59□□□□□ -0.39
CLRN1P58418 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CLRN1P58418 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12.59□□□□□ -0.39
CLRN1P58418 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC12.59□□□□□ -0.39
CLRN1P58418 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC12.59□□□□□ -0.39
CLRN1P58418 TUBB4AP1-201ENST00000450755 1325 ntBASIC12.59□□□□□ -0.39
CLRN1P58418 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CLRN1P58418 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.59□□□□□ -0.39
CLRN1P58418 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC12.58□□□□□ -0.39
CLRN1P58418 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.39
CLRN1P58418 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
CLRN1P58418 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC12.58□□□□□ -0.39
CLRN1P58418 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
CLRN1P58418 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.39
CLRN1P58418 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.58□□□□□ -0.4
CLRN1P58418 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CLRN1P58418 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms