Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 TUBB8P5-201ENST00000445286 1351 ntBASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 GAS6-AS2-201ENST00000608651 1952 ntTSL 2 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 MKL1-212ENST00000618417 1842 ntTSL 5 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 LYG2-201ENST00000333017 862 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 AL356653.1-201ENST00000402743 360 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 NOS2P3-201ENST00000411468 867 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 RPSAP61-201ENST00000412542 878 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 HMGN1P4-201ENST00000419500 290 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 NOS2P2-201ENST00000426269 867 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 SMUG1-213ENST00000506595 712 ntTSL 5 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 PRDX2P3-201ENST00000515779 586 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 AC100858.2-201ENST00000531948 487 ntTSL 3 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 AC022382.1-201ENST00000602768 336 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 AC112220.4-201ENST00000604982 1263 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 OR2A25-203ENST00000641663 1741 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 AC111170.3-201ENST00000624282 2464 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 SERPIND1-202ENST00000406799 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 OR2T33-201ENST00000318021 1066 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 CACYBPP3-201ENST00000406011 625 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 IL1RN-205ENST00000409930 848 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 SAP18P2-201ENST00000434334 459 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 PGAM5-202ENST00000454808 1084 ntTSL 3 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 AC116552.1-201ENST00000563243 733 ntTSL 3 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 AC106785.2-201ENST00000564385 1319 ntBASIC17.38■□□□□ 0.37
SHANK3Q9BYB0 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 TRIM39-RPP21-201ENST00000623385 1698 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 ELMOD3-201ENST00000315658 2685 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 LIMS2-203ENST00000409254 867 ntTSL 3 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 AC008267.3-201ENST00000448776 712 ntBASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 AC104117.1-201ENST00000517817 900 ntBASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 IGHVII-33-1-201ENST00000524010 280 ntBASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 AC131009.2-201ENST00000542763 770 ntTSL 3 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 JPT2-214ENST00000569765 782 ntTSL 2 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 FRG2EP-201ENST00000634243 835 ntBASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 TCP1-215ENST00000544255 1403 ntTSL 5 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHANK3Q9BYB0 FAM183BP-201ENST00000409072 1595 ntBASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 HIST1H3H-201ENST00000369163 1237 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 GSTM2P1-201ENST00000405166 654 ntBASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 TEDDM2P-201ENST00000414169 786 ntBASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 CLK2P1-201ENST00000416636 1294 ntBASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 TMEM256P1-201ENST00000430550 340 ntBASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 AL583804.1-201ENST00000448643 810 ntTSL 3 BASIC17.36■□□□□ 0.37
SHANK3Q9BYB0 AC009517.1-201ENST00000454750 570 ntBASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms