Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Pou6f1-204ENSMUST00000176271 4575 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm43937-201ENSMUST00000204640 3122 ntBASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Ift88-201ENSMUST00000122063 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Cep250-202ENSMUST00000094421 7919 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 A230009B12Rik-202ENSMUST00000159602 1810 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Rin1-208ENSMUST00000225427 4503 ntAPPRIS P2 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Kcnma1-207ENSMUST00000172099 3354 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Oprm1-208ENSMUST00000092734 1569 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Gm7405-201ENSMUST00000121476 1337 ntBASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Supt3-201ENSMUST00000050630 1508 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 C4b-201ENSMUST00000069507 5379 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Scgb2b25-ps-201ENSMUST00000121936 307 ntBASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Gm12224-201ENSMUST00000124047 567 ntTSL 2 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Gm9081-201ENSMUST00000182346 991 ntBASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Gm43671-201ENSMUST00000200422 433 ntBASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Gm12216-207ENSMUST00000220191 1073 ntAPPRIS P5 TSL 5 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 AC134793.1-202ENSMUST00000227444 803 ntBASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Rbbp5-201ENSMUST00000027700 3385 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Prg4-201ENSMUST00000006171 1869 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 A930006I01Rik-201ENSMUST00000139065 2229 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Upf3bQ3ULL6 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Uaca-201ENSMUST00000050183 4428 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Myh1-202ENSMUST00000075734 6012 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 C1qtnf7-202ENSMUST00000121872 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Mir1893-201ENSMUST00000122565 83 ntBASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Gm42660-201ENSMUST00000197733 947 ntBASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Ube2d3-216ENSMUST00000199613 738 ntAPPRIS P2 TSL 3 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 BC028471-201ENSMUST00000200937 520 ntTSL 2 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Myl6-203ENSMUST00000217776 562 ntTSL 3 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Gm7525-201ENSMUST00000219425 454 ntBASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 n-R5s211-201ENSMUST00000093689 119 ntBASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 BC052040-201ENSMUST00000110918 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Ap5s1-201ENSMUST00000089506 1432 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Slc23a2-201ENSMUST00000028815 6364 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Hyal2-206ENSMUST00000195681 2968 ntBASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Gm6768-201ENSMUST00000022467 1878 ntBASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Matn2-205ENSMUST00000227759 3569 ntAPPRIS ALT2 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Slc9a8-202ENSMUST00000073873 4429 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Upf3bQ3ULL6 Galr1-201ENSMUST00000065224 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm17745-201ENSMUST00000212186 1692 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm35363-201ENSMUST00000209330 1317 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Gm10548-201ENSMUST00000097631 2629 ntBASIC11.65□□□□□ -0.54
Upf3bQ3ULL6 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 79.9 ms