Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 AC005077.3-201ENST00000449614 213 ntBASIC16.4■□□□□ 0.22
RHBDL3P58872 AC244197.1-201ENST00000456494 951 ntBASIC16.4■□□□□ 0.22
RHBDL3P58872 PPOX-204ENST00000462866 473 ntTSL 5 BASIC16.4■□□□□ 0.22
RHBDL3P58872 ALG1L7P-201ENST00000502317 768 ntBASIC16.4■□□□□ 0.22
RHBDL3P58872 GDNF-207ENST00000515058 764 ntTSL 5 BASIC16.4■□□□□ 0.22
RHBDL3P58872 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC16.4■□□□□ 0.22
RHBDL3P58872 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 AC023968.2-201ENST00000560593 1049 ntBASIC16.4■□□□□ 0.22
RHBDL3P58872 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC16.4■□□□□ 0.22
RHBDL3P58872 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC16.4■□□□□ 0.22
RHBDL3P58872 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC16.4■□□□□ 0.22
RHBDL3P58872 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RHBDL3P58872 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
RHBDL3P58872 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
RHBDL3P58872 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.22
RHBDL3P58872 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 AC020763.3-201ENST00000625095 2904 ntBASIC16.39■□□□□ 0.21
RHBDL3P58872 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
RHBDL3P58872 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.39■□□□□ 0.21
RHBDL3P58872 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
RHBDL3P58872 AL080243.1-201ENST00000423293 1060 ntBASIC16.39■□□□□ 0.21
RHBDL3P58872 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC16.39■□□□□ 0.21
RHBDL3P58872 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC16.39■□□□□ 0.21
RHBDL3P58872 RN7SL147P-201ENST00000487345 298 ntBASIC16.39■□□□□ 0.21
RHBDL3P58872 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC16.39■□□□□ 0.21
RHBDL3P58872 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC16.39■□□□□ 0.21
RHBDL3P58872 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC16.39■□□□□ 0.21
RHBDL3P58872 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC16.39■□□□□ 0.21
RHBDL3P58872 AC132812.1-201ENST00000583145 892 ntBASIC16.39■□□□□ 0.21
RHBDL3P58872 AP005212.2-201ENST00000584979 510 ntBASIC16.39■□□□□ 0.21
RHBDL3P58872 RPS5-204ENST00000598098 536 ntTSL 2 BASIC16.39■□□□□ 0.21
RHBDL3P58872 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
RHBDL3P58872 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.39■□□□□ 0.21
RHBDL3P58872 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RHBDL3P58872 KRT8P24-201ENST00000560290 1559 ntBASIC16.38■□□□□ 0.21
RHBDL3P58872 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.38■□□□□ 0.21
RHBDL3P58872 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
RHBDL3P58872 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.38■□□□□ 0.21
RHBDL3P58872 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 PTGER4P2-201ENST00000328411 252 ntBASIC16.38■□□□□ 0.21
RHBDL3P58872 SNU13-204ENST00000402458 462 ntTSL 3 BASIC16.38■□□□□ 0.21
RHBDL3P58872 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC16.38■□□□□ 0.21
RHBDL3P58872 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
RHBDL3P58872 VENTXP4-201ENST00000449029 958 ntBASIC16.38■□□□□ 0.21
RHBDL3P58872 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC16.38■□□□□ 0.21
RHBDL3P58872 PTGER4P3-201ENST00000458150 252 ntBASIC16.38■□□□□ 0.21
RHBDL3P58872 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC16.38■□□□□ 0.21
RHBDL3P58872 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC16.38■□□□□ 0.21
RHBDL3P58872 AC068831.5-201ENST00000557387 328 ntBASIC16.38■□□□□ 0.21
RHBDL3P58872 SRP14-204ENST00000558720 780 ntTSL 2 BASIC16.38■□□□□ 0.21
RHBDL3P58872 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
RHBDL3P58872 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC16.38■□□□□ 0.21
RHBDL3P58872 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC16.38■□□□□ 0.21
RHBDL3P58872 CSTP2-201ENST00000610599 398 ntBASIC16.38■□□□□ 0.21
RHBDL3P58872 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
RHBDL3P58872 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RHBDL3P58872 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms