Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 AC026320.2-201ENST00000434379 478 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 RN7SL720P-201ENST00000488178 304 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 KRT8P1-201ENST00000557533 1207 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 AC242376.1-201ENST00000559033 726 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 STUB1-204ENST00000564370 875 ntTSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 PHBP15-201ENST00000574228 665 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 MIR4754-201ENST00000582477 89 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 AF254983.2-201ENST00000612331 135 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 TCAM1P-207ENST00000485295 1537 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 LINC01815-202ENST00000641468 1409 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 BRD7P5-201ENST00000299197 1822 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 AC103592.1-201ENST00000394513 664 ntBASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 RPSAP15-201ENST00000448168 861 ntBASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 UPF3AP2-201ENST00000457924 1132 ntBASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 RN7SL769P-201ENST00000469386 295 ntBASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 RTN3P1-201ENST00000536295 711 ntBASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 MAX-218ENST00000557746 571 ntTSL 4 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 AL109837.1-201ENST00000603272 613 ntBASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 SNX12-206ENST00000622259 661 ntTSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 AL928921.2-201ENST00000641325 2442 ntBASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 KRT18P9-201ENST00000604826 1300 ntBASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
TRIM39Q9HCM9 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms