Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM4P67936 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM4P67936 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
TPM4P67936 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM4P67936 MIR1233-2-201ENST00000408138 82 ntBASIC16.07■□□□□ 0.16
TPM4P67936 MIR1233-1-201ENST00000408722 82 ntBASIC16.07■□□□□ 0.16
TPM4P67936 MRPS18AP1-201ENST00000414458 589 ntBASIC16.07■□□□□ 0.16
TPM4P67936 AC136604.1-202ENST00000425471 771 ntBASIC16.07■□□□□ 0.16
TPM4P67936 DFFBP1-201ENST00000433250 979 ntBASIC16.07■□□□□ 0.16
TPM4P67936 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
TPM4P67936 AL391280.1-201ENST00000506969 1062 ntBASIC16.07■□□□□ 0.16
TPM4P67936 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.07■□□□□ 0.16
TPM4P67936 CLUHP6-201ENST00000580789 941 ntBASIC16.07■□□□□ 0.16
TPM4P67936 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.07■□□□□ 0.16
TPM4P67936 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM4P67936 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM4P67936 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
TPM4P67936 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.07■□□□□ 0.16
TPM4P67936 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM4P67936 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM4P67936 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC16.07■□□□□ 0.16
TPM4P67936 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM4P67936 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM4P67936 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM4P67936 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC16.07■□□□□ 0.16
TPM4P67936 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM4P67936 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM4P67936 ADAMTSL1-205ENST00000380548 8030 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
TPM4P67936 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TPM4P67936 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM4P67936 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
TPM4P67936 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TPM4P67936 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC16.07■□□□□ 0.16
TPM4P67936 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TPM4P67936 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TPM4P67936 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 AMT-221ENST00000538581 2038 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 F2-205ENST00000530231 1849 ntTSL 5 BASIC16.06■□□□□ 0.16
TPM4P67936 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.06■□□□□ 0.16
TPM4P67936 AC024075.2-201ENST00000598112 1473 ntBASIC16.06■□□□□ 0.16
TPM4P67936 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 AL391825.1-201ENST00000457671 1364 ntBASIC16.06■□□□□ 0.16
TPM4P67936 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TPM4P67936 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.06■□□□□ 0.16
TPM4P67936 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.06■□□□□ 0.16
TPM4P67936 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.06■□□□□ 0.16
TPM4P67936 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.06■□□□□ 0.16
TPM4P67936 AC093433.1-201ENST00000458048 571 ntBASIC16.06■□□□□ 0.16
TPM4P67936 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 IGHVIII-5-2-201ENST00000522505 261 ntBASIC16.06■□□□□ 0.16
TPM4P67936 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
TPM4P67936 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
TPM4P67936 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
TPM4P67936 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 CU634019.7-201ENST00000624153 1185 ntBASIC16.06■□□□□ 0.16
TPM4P67936 FP236241.2-201ENST00000624906 1185 ntBASIC16.06■□□□□ 0.16
TPM4P67936 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC16.06■□□□□ 0.16
TPM4P67936 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC16.06■□□□□ 0.16
TPM4P67936 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC16.06■□□□□ 0.16
TPM4P67936 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TPM4P67936 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
TPM4P67936 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TPM4P67936 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TPM4P67936 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TPM4P67936 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TPM4P67936 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TPM4P67936 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 170.3 ms