Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 AC020907.1-201ENST00000616460 1350 ntBASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM55Q9BYV6 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 TLE1P1-201ENST00000422965 589 ntBASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 AC026954.1-201ENST00000429771 1293 ntBASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 AC007969.1-201ENST00000433675 447 ntBASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 AC016694.1-201ENST00000434179 700 ntBASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 DUX4L47-201ENST00000566374 394 ntBASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 AC009542.2-202ENST00000619004 1067 ntBASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 TUBB8P4-201ENST00000511806 1324 ntBASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 MRPL37P1-201ENST00000592451 1337 ntBASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM55Q9BYV6 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AL138799.1-201ENST00000448213 1675 ntBASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 NUS1P3-201ENST00000423502 862 ntBASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms