Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL162726.2-201ENST00000438986 1017 ntBASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 AC106820.3-201ENST00000561653 397 ntBASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 AC010970.1-201ENST00000445125 1848 ntBASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28BQ9BUN5 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
CCDC28BQ9BUN5 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28BQ9BUN5 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
CCDC28BQ9BUN5 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28BQ9BUN5 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.96□□□□□ -0.18
CCDC28BQ9BUN5 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28BQ9BUN5 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 KRT18P15-201ENST00000458108 1291 ntBASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 AC008825.2-201ENST00000603374 718 ntBASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 AL391825.1-201ENST00000457671 1364 ntBASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28BQ9BUN5 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 AL445250.1-201ENST00000641671 2259 ntBASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 LINC01165-201ENST00000445190 1623 ntBASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 TRPC7-201ENST00000352189 2241 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 CICP12-201ENST00000455801 843 ntBASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms