Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 AC092068.2-201ENST00000590491 1708 ntBASIC17.8■□□□□ 0.44
SMCO4Q9NRQ5 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMCO4Q9NRQ5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SMCO4Q9NRQ5 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMCO4Q9NRQ5 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMCO4Q9NRQ5 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMCO4Q9NRQ5 C11orf96-202ENST00000528572 1834 ntBASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
SMCO4Q9NRQ5 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
SMCO4Q9NRQ5 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 AL031258.1-201ENST00000623562 325 ntBASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SMCO4Q9NRQ5 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SMCO4Q9NRQ5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SMCO4Q9NRQ5 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
SMCO4Q9NRQ5 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC17.76■□□□□ 0.43
SMCO4Q9NRQ5 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
SMCO4Q9NRQ5 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMCO4Q9NRQ5 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMCO4Q9NRQ5 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMCO4Q9NRQ5 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SMCO4Q9NRQ5 ESRRAP2-201ENST00000418437 1549 ntBASIC17.76■□□□□ 0.43
SMCO4Q9NRQ5 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.76■□□□□ 0.43
SMCO4Q9NRQ5 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.76■□□□□ 0.43
SMCO4Q9NRQ5 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMCO4Q9NRQ5 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC17.74■□□□□ 0.43
SMCO4Q9NRQ5 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SMCO4Q9NRQ5 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMCO4Q9NRQ5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMCO4Q9NRQ5 LSR-205ENST00000427250 1606 ntTSL 2 BASIC17.74■□□□□ 0.43
SMCO4Q9NRQ5 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMCO4Q9NRQ5 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMCO4Q9NRQ5 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMCO4Q9NRQ5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMCO4Q9NRQ5 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMCO4Q9NRQ5 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMCO4Q9NRQ5 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.73■□□□□ 0.43
SMCO4Q9NRQ5 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMCO4Q9NRQ5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMCO4Q9NRQ5 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMCO4Q9NRQ5 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.73■□□□□ 0.43
SMCO4Q9NRQ5 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
SMCO4Q9NRQ5 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMCO4Q9NRQ5 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.73■□□□□ 0.43
SMCO4Q9NRQ5 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMCO4Q9NRQ5 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms