Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
ATG4AQ8WYN0 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
ATG4AQ8WYN0 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
ATG4AQ8WYN0 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4AQ8WYN0 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4AQ8WYN0 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.94□□□□□ -0.02
ATG4AQ8WYN0 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC14.94□□□□□ -0.02
ATG4AQ8WYN0 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4AQ8WYN0 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4AQ8WYN0 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4AQ8WYN0 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 AL008718.2-201ENST00000609206 1313 ntBASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 AL512384.1-201ENST00000406683 331 ntBASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 RN7SL692P-201ENST00000464677 288 ntBASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 ZACNP1-201ENST00000612259 710 ntBASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 IGHV3-72-202ENST00000621503 303 ntBASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 AC114271.1-201ENST00000612689 2813 ntBASIC14.93□□□□□ -0.02
ATG4AQ8WYN0 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 AC135782.3-201ENST00000562782 2105 ntBASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 AC006001.1-201ENST00000325130 474 ntBASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 AL645933.1-201ENST00000440087 609 ntBASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 HIST2H2BB-201ENST00000449108 381 ntBASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 C2orf69P2-201ENST00000562032 1123 ntBASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms