Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.37■□□□□ 0.21
SCN4AP35499 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SCN4AP35499 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.37■□□□□ 0.21
SCN4AP35499 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.36■□□□□ 0.21
SCN4AP35499 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC16.36■□□□□ 0.21
SCN4AP35499 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.36■□□□□ 0.21
SCN4AP35499 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 MIR193A-201ENST00000384882 88 ntBASIC16.36■□□□□ 0.21
SCN4AP35499 AL121994.1-201ENST00000413189 402 ntBASIC16.36■□□□□ 0.21
SCN4AP35499 AC074019.1-201ENST00000428788 1096 ntBASIC16.36■□□□□ 0.21
SCN4AP35499 RN7SL87P-201ENST00000497657 288 ntBASIC16.36■□□□□ 0.21
SCN4AP35499 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC16.36■□□□□ 0.21
SCN4AP35499 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC16.36■□□□□ 0.21
SCN4AP35499 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC16.36■□□□□ 0.21
SCN4AP35499 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC16.36■□□□□ 0.21
SCN4AP35499 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC16.36■□□□□ 0.21
SCN4AP35499 SNORA50D-202ENST00000627561 132 ntBASIC16.36■□□□□ 0.21
SCN4AP35499 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC16.36■□□□□ 0.21
SCN4AP35499 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
SCN4AP35499 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
SCN4AP35499 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.36■□□□□ 0.21
SCN4AP35499 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC16.36■□□□□ 0.21
SCN4AP35499 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
SCN4AP35499 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.36■□□□□ 0.21
SCN4AP35499 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.36■□□□□ 0.21
SCN4AP35499 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
SCN4AP35499 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
SCN4AP35499 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.36■□□□□ 0.21
SCN4AP35499 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.36■□□□□ 0.21
SCN4AP35499 AC026271.1-201ENST00000447794 1348 ntBASIC16.36■□□□□ 0.21
SCN4AP35499 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SCN4AP35499 RBMXP1-201ENST00000408004 1191 ntBASIC16.35■□□□□ 0.21
SCN4AP35499 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 NOS2P3-201ENST00000411468 867 ntBASIC16.35■□□□□ 0.21
SCN4AP35499 NOS2P2-201ENST00000426269 867 ntBASIC16.35■□□□□ 0.21
SCN4AP35499 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC16.35■□□□□ 0.21
SCN4AP35499 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 ALG10-202ENST00000538927 571 ntTSL 5 BASIC16.35■□□□□ 0.21
SCN4AP35499 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC16.35■□□□□ 0.21
SCN4AP35499 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC16.35■□□□□ 0.21
SCN4AP35499 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC16.35■□□□□ 0.21
SCN4AP35499 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC16.35■□□□□ 0.21
SCN4AP35499 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC16.35■□□□□ 0.21
SCN4AP35499 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC16.35■□□□□ 0.21
SCN4AP35499 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC16.35■□□□□ 0.21
SCN4AP35499 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.35■□□□□ 0.21
SCN4AP35499 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
SCN4AP35499 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.35■□□□□ 0.21
SCN4AP35499 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SCN4AP35499 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.35■□□□□ 0.21
SCN4AP35499 TCAF2P1-201ENST00000291129 2421 ntBASIC16.35■□□□□ 0.21
SCN4AP35499 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 RPL3P9-201ENST00000463217 1183 ntBASIC16.35■□□□□ 0.21
SCN4AP35499 AC104115.1-201ENST00000484005 623 ntBASIC16.35■□□□□ 0.21
SCN4AP35499 AC009812.1-201ENST00000605948 1059 ntBASIC16.35■□□□□ 0.21
SCN4AP35499 CDIPT-AS1-203ENST00000638164 713 ntBASIC16.35■□□□□ 0.21
SCN4AP35499 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
SCN4AP35499 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
SCN4AP35499 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SCN4AP35499 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
SCN4AP35499 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SCN4AP35499 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.34■□□□□ 0.21
SCN4AP35499 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SCN4AP35499 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.34■□□□□ 0.21
SCN4AP35499 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.34■□□□□ 0.21
SCN4AP35499 AC024075.2-201ENST00000598112 1473 ntBASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms