Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 LYPLA2P1-203ENST00000447689 696 ntBASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 DPY19L2P5-201ENST00000456300 331 ntBASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 OR5BD1P-201ENST00000532527 817 ntBASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 AC068867.1-201ENST00000559855 150 ntBASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 CMC2-204ENST00000562713 573 ntTSL 3 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 CMC2-209ENST00000565108 399 ntTSL 2 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 AC007250.1-201ENST00000608934 338 ntBASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 AC105137.3-201ENST00000617588 984 ntBASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PAAF1Q9BRP4 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.21■□□□□ 0.02
PAAF1Q9BRP4 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
PAAF1Q9BRP4 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PAAF1Q9BRP4 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC15.21■□□□□ 0.02
PAAF1Q9BRP4 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
PAAF1Q9BRP4 SARS-202ENST00000369923 1882 ntTSL 5 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 AC067930.6-201ENST00000623257 4947 ntBASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 CYP51A1P3-201ENST00000400072 1428 ntBASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 KRT8P18-201ENST00000413425 1445 ntBASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 CELP-201ENST00000411440 1249 ntTSL 5 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 BX679664.3-201ENST00000414070 555 ntBASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 AC004837.1-201ENST00000446267 564 ntBASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 PIN4P1-201ENST00000451079 396 ntBASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 AC113935.1-201ENST00000471722 555 ntBASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PAAF1Q9BRP4 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms