Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.93□□□□□ -0.18
PCDH1Q08174 AC133540.1-201ENST00000620845 1019 ntBASIC13.93□□□□□ -0.18
PCDH1Q08174 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
PCDH1Q08174 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
PCDH1Q08174 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.93□□□□□ -0.18
PCDH1Q08174 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.93□□□□□ -0.18
PCDH1Q08174 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
PCDH1Q08174 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.92□□□□□ -0.18
PCDH1Q08174 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
PCDH1Q08174 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 AHCYP4-201ENST00000419201 1315 ntBASIC13.92□□□□□ -0.18
PCDH1Q08174 SHMT1P1-201ENST00000419974 1312 ntBASIC13.92□□□□□ -0.18
PCDH1Q08174 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
PCDH1Q08174 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
PCDH1Q08174 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.92□□□□□ -0.18
PCDH1Q08174 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
PCDH1Q08174 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.92□□□□□ -0.18
PCDH1Q08174 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.92□□□□□ -0.18
PCDH1Q08174 KRT18P36-201ENST00000411618 1276 ntBASIC13.92□□□□□ -0.18
PCDH1Q08174 RPSAP36-202ENST00000494591 1261 ntBASIC13.92□□□□□ -0.18
PCDH1Q08174 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.92□□□□□ -0.18
PCDH1Q08174 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC13.92□□□□□ -0.18
PCDH1Q08174 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.92□□□□□ -0.18
PCDH1Q08174 AC133552.6-201ENST00000613406 534 ntBASIC13.92□□□□□ -0.18
PCDH1Q08174 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 AL023803.2-201ENST00000620080 638 ntBASIC13.92□□□□□ -0.18
PCDH1Q08174 AL591471.1-201ENST00000621855 229 ntBASIC13.92□□□□□ -0.18
PCDH1Q08174 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.92□□□□□ -0.18
PCDH1Q08174 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
PCDH1Q08174 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PCDH1Q08174 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
PCDH1Q08174 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCDH1Q08174 AC131212.3-201ENST00000624087 4219 ntBASIC13.91□□□□□ -0.18
PCDH1Q08174 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCDH1Q08174 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCDH1Q08174 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCDH1Q08174 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PCDH1Q08174 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.91□□□□□ -0.18
PCDH1Q08174 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCDH1Q08174 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCDH1Q08174 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCDH1Q08174 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
PCDH1Q08174 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.91□□□□□ -0.18
PCDH1Q08174 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.91□□□□□ -0.18
PCDH1Q08174 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCDH1Q08174 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCDH1Q08174 MIR663B-201ENST00000408361 115 ntBASIC13.91□□□□□ -0.18
PCDH1Q08174 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms