Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.7□□□□□ -0.22
UPK1AO00322 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.7□□□□□ -0.22
UPK1AO00322 HIST2H2BB-201ENST00000449108 381 ntBASIC13.7□□□□□ -0.22
UPK1AO00322 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.7□□□□□ -0.22
UPK1AO00322 ACA64.2-201ENST00000459014 129 ntBASIC13.7□□□□□ -0.22
UPK1AO00322 AC104989.1-201ENST00000519711 778 ntBASIC13.7□□□□□ -0.22
UPK1AO00322 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.7□□□□□ -0.22
UPK1AO00322 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.7□□□□□ -0.22
UPK1AO00322 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.7□□□□□ -0.22
UPK1AO00322 MIR6775-201ENST00000617557 69 ntBASIC13.7□□□□□ -0.22
UPK1AO00322 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.7□□□□□ -0.22
UPK1AO00322 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 AP002761.4-201ENST00000565433 3361 ntBASIC13.7□□□□□ -0.22
UPK1AO00322 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
UPK1AO00322 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
UPK1AO00322 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.7□□□□□ -0.22
UPK1AO00322 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
UPK1AO00322 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
UPK1AO00322 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 AL365181.3-201ENST00000605886 3222 ntBASIC13.69□□□□□ -0.22
UPK1AO00322 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.69□□□□□ -0.22
UPK1AO00322 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.69□□□□□ -0.22
UPK1AO00322 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC13.69□□□□□ -0.22
UPK1AO00322 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.69□□□□□ -0.22
UPK1AO00322 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
UPK1AO00322 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 MIR326-201ENST00000362220 95 ntBASIC13.69□□□□□ -0.22
UPK1AO00322 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.69□□□□□ -0.22
UPK1AO00322 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.69□□□□□ -0.22
UPK1AO00322 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.69□□□□□ -0.22
UPK1AO00322 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.69□□□□□ -0.22
UPK1AO00322 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC13.69□□□□□ -0.22
UPK1AO00322 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.69□□□□□ -0.22
UPK1AO00322 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.69□□□□□ -0.22
UPK1AO00322 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
UPK1AO00322 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.69□□□□□ -0.22
UPK1AO00322 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.69□□□□□ -0.22
UPK1AO00322 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
UPK1AO00322 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
UPK1AO00322 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.69□□□□□ -0.22
UPK1AO00322 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
UPK1AO00322 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
UPK1AO00322 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 CR383656.2-201ENST00000548656 2254 ntBASIC13.69□□□□□ -0.22
UPK1AO00322 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC13.69□□□□□ -0.22
UPK1AO00322 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
UPK1AO00322 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
UPK1AO00322 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC13.68□□□□□ -0.22
UPK1AO00322 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 TUBB8P4-201ENST00000511806 1324 ntBASIC13.68□□□□□ -0.22
UPK1AO00322 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
UPK1AO00322 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC13.68□□□□□ -0.22
UPK1AO00322 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
UPK1AO00322 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.68□□□□□ -0.22
UPK1AO00322 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms