Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14□□□□□ -0.17
FOXA1P55317 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC14□□□□□ -0.17
FOXA1P55317 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14□□□□□ -0.17
FOXA1P55317 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14□□□□□ -0.17
FOXA1P55317 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
FOXA1P55317 AC006001.1-201ENST00000325130 474 ntBASIC14□□□□□ -0.17
FOXA1P55317 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14□□□□□ -0.17
FOXA1P55317 MIR1202-201ENST00000408529 83 ntBASIC14□□□□□ -0.17
FOXA1P55317 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14□□□□□ -0.17
FOXA1P55317 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14□□□□□ -0.17
FOXA1P55317 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 TTTY23B-201ENST00000442790 549 ntBASIC14□□□□□ -0.17
FOXA1P55317 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14□□□□□ -0.17
FOXA1P55317 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14□□□□□ -0.17
FOXA1P55317 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
FOXA1P55317 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14□□□□□ -0.17
FOXA1P55317 C2orf69P2-201ENST00000562032 1123 ntBASIC14□□□□□ -0.17
FOXA1P55317 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14□□□□□ -0.17
FOXA1P55317 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
FOXA1P55317 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14□□□□□ -0.17
FOXA1P55317 AL136301.1-201ENST00000615830 422 ntBASIC14□□□□□ -0.17
FOXA1P55317 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14□□□□□ -0.17
FOXA1P55317 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC14□□□□□ -0.17
FOXA1P55317 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14□□□□□ -0.17
FOXA1P55317 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14□□□□□ -0.17
FOXA1P55317 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14□□□□□ -0.17
FOXA1P55317 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
FOXA1P55317 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 MIR497HG-202ENST00000572453 3838 ntBASIC14□□□□□ -0.17
FOXA1P55317 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
FOXA1P55317 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 AC004241.5-201ENST00000623870 2448 ntBASIC14□□□□□ -0.17
FOXA1P55317 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC14□□□□□ -0.17
FOXA1P55317 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA1P55317 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
FOXA1P55317 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
FOXA1P55317 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA1P55317 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
FOXA1P55317 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA1P55317 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.99□□□□□ -0.17
FOXA1P55317 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.99□□□□□ -0.17
FOXA1P55317 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.99□□□□□ -0.17
FOXA1P55317 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 RN7SL692P-201ENST00000464677 288 ntBASIC13.99□□□□□ -0.17
FOXA1P55317 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.99□□□□□ -0.17
FOXA1P55317 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.99□□□□□ -0.17
FOXA1P55317 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.99□□□□□ -0.17
FOXA1P55317 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.99□□□□□ -0.17
FOXA1P55317 PPY2P-201ENST00000582808 702 ntBASIC13.99□□□□□ -0.17
FOXA1P55317 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
FOXA1P55317 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 IGHV3-72-202ENST00000621503 303 ntBASIC13.99□□□□□ -0.17
FOXA1P55317 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA1P55317 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 GOLGA8EP-201ENST00000530246 1959 ntBASIC13.99□□□□□ -0.17
FOXA1P55317 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA1P55317 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms