Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA4P78363 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA4P78363 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
ABCA4P78363 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC12.46□□□□□ -0.41
ABCA4P78363 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC12.46□□□□□ -0.41
ABCA4P78363 FAM86KP-201ENST00000509817 987 ntBASIC12.46□□□□□ -0.41
ABCA4P78363 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC12.46□□□□□ -0.41
ABCA4P78363 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 MIR5196-201ENST00000578146 115 ntBASIC12.46□□□□□ -0.41
ABCA4P78363 MIR2392-201ENST00000584881 84 ntBASIC12.46□□□□□ -0.41
ABCA4P78363 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC12.46□□□□□ -0.41
ABCA4P78363 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC12.46□□□□□ -0.41
ABCA4P78363 AC021016.3-201ENST00000608367 477 ntBASIC12.46□□□□□ -0.41
ABCA4P78363 MVK-217ENST00000639206 367 ntTSL 5 BASIC12.46□□□□□ -0.41
ABCA4P78363 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
ABCA4P78363 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC12.46□□□□□ -0.41
ABCA4P78363 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
ABCA4P78363 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC12.46□□□□□ -0.41
ABCA4P78363 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
ABCA4P78363 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC12.46□□□□□ -0.41
ABCA4P78363 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
ABCA4P78363 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
ABCA4P78363 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC12.46□□□□□ -0.41
ABCA4P78363 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
ABCA4P78363 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
ABCA4P78363 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC12.46□□□□□ -0.41
ABCA4P78363 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
ABCA4P78363 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA4P78363 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC12.46□□□□□ -0.41
ABCA4P78363 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC12.46□□□□□ -0.42
ABCA4P78363 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC12.46□□□□□ -0.42
ABCA4P78363 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 MT3-203ENST00000565838 421 ntTSL 3 BASIC12.46□□□□□ -0.42
ABCA4P78363 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC12.46□□□□□ -0.42
ABCA4P78363 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.46□□□□□ -0.42
ABCA4P78363 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.42
ABCA4P78363 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.46□□□□□ -0.42
ABCA4P78363 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
ABCA4P78363 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC12.46□□□□□ -0.42
ABCA4P78363 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC12.46□□□□□ -0.42
ABCA4P78363 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
ABCA4P78363 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC12.45□□□□□ -0.42
ABCA4P78363 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
ABCA4P78363 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC12.45□□□□□ -0.42
ABCA4P78363 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC12.45□□□□□ -0.42
ABCA4P78363 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC12.45□□□□□ -0.42
ABCA4P78363 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC12.45□□□□□ -0.42
ABCA4P78363 AL592076.1-201ENST00000424448 303 ntBASIC12.45□□□□□ -0.42
ABCA4P78363 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC12.45□□□□□ -0.42
ABCA4P78363 AC010234.1-201ENST00000494599 870 ntBASIC12.45□□□□□ -0.42
ABCA4P78363 AC027139.1-201ENST00000565286 951 ntBASIC12.45□□□□□ -0.42
ABCA4P78363 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC12.45□□□□□ -0.42
ABCA4P78363 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
ABCA4P78363 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC12.45□□□□□ -0.42
ABCA4P78363 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC12.45□□□□□ -0.42
ABCA4P78363 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
ABCA4P78363 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC12.45□□□□□ -0.42
ABCA4P78363 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA4P78363 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms