Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 HADH-202ENST00000403312 1752 ntTSL 5 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 FAM197Y7-201ENST00000432892 766 ntBASIC15.07■□□□□ 0
ATG4AQ8WYN0 AL355864.2-201ENST00000447420 863 ntBASIC15.07■□□□□ 0
ATG4AQ8WYN0 BCRP2-202ENST00000447763 634 ntBASIC15.07■□□□□ 0
ATG4AQ8WYN0 CRB3P1-201ENST00000449338 276 ntBASIC15.07■□□□□ 0
ATG4AQ8WYN0 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 RN7SL837P-201ENST00000463010 287 ntBASIC15.07■□□□□ 0
ATG4AQ8WYN0 BCRP6-201ENST00000510112 632 ntBASIC15.07■□□□□ 0
ATG4AQ8WYN0 BCRP7-201ENST00000511549 544 ntBASIC15.07■□□□□ 0
ATG4AQ8WYN0 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 AC132938.4-201ENST00000623835 848 ntBASIC15.07■□□□□ 0
ATG4AQ8WYN0 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 AL928654.5-201ENST00000624831 2501 ntBASIC15.07■□□□□ 0
ATG4AQ8WYN0 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.07■□□□□ 0
ATG4AQ8WYN0 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC15.07■□□□□ 0
ATG4AQ8WYN0 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.06■□□□□ 0
ATG4AQ8WYN0 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 MIR497HG-202ENST00000572453 3838 ntBASIC15.06■□□□□ 0
ATG4AQ8WYN0 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 AP006294.1-201ENST00000415407 339 ntBASIC15.06■□□□□ 0
ATG4AQ8WYN0 FAM8A4P-201ENST00000435433 1213 ntBASIC15.06■□□□□ 0
ATG4AQ8WYN0 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 CICP12-201ENST00000455801 843 ntBASIC15.06■□□□□ 0
ATG4AQ8WYN0 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 RNA5SP486-201ENST00000515961 83 ntBASIC15.06■□□□□ 0
ATG4AQ8WYN0 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 AC104506.1-201ENST00000609247 429 ntBASIC15.06■□□□□ 0
ATG4AQ8WYN0 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 AC009093.10-201ENST00000641956 1442 ntBASIC15.06■□□□□ 0
ATG4AQ8WYN0 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC15.06■□□□□ 0
ATG4AQ8WYN0 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
ATG4AQ8WYN0 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ 0
ATG4AQ8WYN0 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.05■□□□□ 0
ATG4AQ8WYN0 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC15.05■□□□□ 0
ATG4AQ8WYN0 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
ATG4AQ8WYN0 AC126335.2-201ENST00000623362 4637 ntBASIC15.05■□□□□ 0
ATG4AQ8WYN0 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
ATG4AQ8WYN0 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 AC092933.1-201ENST00000393644 945 ntBASIC15.05■□□□□ -0
ATG4AQ8WYN0 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 AC005586.2-201ENST00000563946 837 ntBASIC15.05■□□□□ -0
ATG4AQ8WYN0 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 AC073413.1-201ENST00000603927 732 ntBASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms