Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 AC134407.3-201ENST00000624035 2139 ntBASIC11.98□□□□□ -0.49
CDX1P47902 AC023090.2-201ENST00000625182 2110 ntBASIC11.98□□□□□ -0.49
CDX1P47902 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 AC015802.1-201ENST00000588104 1449 ntBASIC11.98□□□□□ -0.49
CDX1P47902 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 AC079776.1-201ENST00000401540 1152 ntBASIC11.98□□□□□ -0.49
CDX1P47902 AC093433.1-201ENST00000458048 571 ntBASIC11.98□□□□□ -0.49
CDX1P47902 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
CDX1P47902 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC11.98□□□□□ -0.49
CDX1P47902 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 MIR6805-201ENST00000615055 62 ntBASIC11.98□□□□□ -0.49
CDX1P47902 AP005019.2-201ENST00000615104 511 ntBASIC11.98□□□□□ -0.49
CDX1P47902 BX539320.1-201ENST00000623759 877 ntBASIC11.98□□□□□ -0.49
CDX1P47902 AC005252.2-201ENST00000624630 1141 ntBASIC11.98□□□□□ -0.49
CDX1P47902 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC11.98□□□□□ -0.49
CDX1P47902 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 SLC9A7P1-202ENST00000556476 2239 ntBASIC11.98□□□□□ -0.49
CDX1P47902 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 POM121L4P-202ENST00000427789 1891 ntBASIC11.97□□□□□ -0.49
CDX1P47902 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC11.97□□□□□ -0.49
CDX1P47902 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC11.97□□□□□ -0.49
CDX1P47902 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 AC084364.1-201ENST00000551967 1556 ntBASIC11.97□□□□□ -0.49
CDX1P47902 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CDX1P47902 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 AC018665.1-201ENST00000622927 1362 ntBASIC11.97□□□□□ -0.49
CDX1P47902 AC134312.5-201ENST00000568031 1313 ntBASIC11.97□□□□□ -0.49
CDX1P47902 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CDX1P47902 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 LBX2-201ENST00000341396 886 ntTSL 3 BASIC11.97□□□□□ -0.49
CDX1P47902 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
CDX1P47902 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC11.97□□□□□ -0.49
CDX1P47902 AC012441.1-201ENST00000446669 685 ntBASIC11.97□□□□□ -0.49
CDX1P47902 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC11.97□□□□□ -0.49
CDX1P47902 PFN2-205ENST00000461868 613 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 TMEM198B-204ENST00000484016 896 ntBASIC11.97□□□□□ -0.49
CDX1P47902 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 AP001582.1-201ENST00000525856 295 ntBASIC11.97□□□□□ -0.49
CDX1P47902 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 HILS1-202ENST00000545329 423 ntBASIC11.97□□□□□ -0.49
CDX1P47902 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms