Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Nkx3-1P97436 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Nkx3-1P97436 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Nkx3-1P97436 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.61■□□□□ 0.41
Nkx3-1P97436 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Nkx3-1P97436 Gm7160-202ENSMUST00000188519 1027 ntBASIC17.61■□□□□ 0.41
Nkx3-1P97436 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Nkx3-1P97436 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Nkx3-1P97436 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Nkx3-1P97436 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Nkx3-1P97436 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Nkx3-1P97436 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Nkx3-1P97436 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Nkx3-1P97436 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Nkx3-1P97436 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Nkx3-1P97436 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Nkx3-1P97436 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Nkx3-1P97436 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Nkx3-1P97436 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Nkx3-1P97436 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Gm5874-201ENSMUST00000096101 508 ntBASIC17.59■□□□□ 0.41
Nkx3-1P97436 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nkx3-1P97436 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Nkx3-1P97436 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Nkx3-1P97436 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.58■□□□□ 0.41
Nkx3-1P97436 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nkx3-1P97436 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC17.58■□□□□ 0.4
Nkx3-1P97436 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Nkx3-1P97436 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Nkx3-1P97436 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC17.58■□□□□ 0.4
Nkx3-1P97436 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nkx3-1P97436 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nkx3-1P97436 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nkx3-1P97436 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Nkx3-1P97436 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Nkx3-1P97436 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Nkx3-1P97436 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nkx3-1P97436 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nkx3-1P97436 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC17.56■□□□□ 0.4
Nkx3-1P97436 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC17.56■□□□□ 0.4
Nkx3-1P97436 AC164883.3-201ENSMUST00000227396 1774 ntBASIC17.56■□□□□ 0.4
Nkx3-1P97436 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nkx3-1P97436 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nkx3-1P97436 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Nkx3-1P97436 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nkx3-1P97436 Spcs1-204ENSMUST00000226782 949 ntBASIC17.56■□□□□ 0.4
Nkx3-1P97436 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nkx3-1P97436 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.56■□□□□ 0.4
Nkx3-1P97436 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nkx3-1P97436 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC17.56■□□□□ 0.4
Nkx3-1P97436 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nkx3-1P97436 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nkx3-1P97436 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Gm26833-201ENSMUST00000180899 440 ntBASIC17.55■□□□□ 0.4
Nkx3-1P97436 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.55■□□□□ 0.4
Nkx3-1P97436 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Gm13042-201ENSMUST00000119244 1955 ntBASIC17.55■□□□□ 0.4
Nkx3-1P97436 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 AC153962.1-201ENSMUST00000218530 1948 ntBASIC17.55■□□□□ 0.4
Nkx3-1P97436 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nkx3-1P97436 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Nkx3-1P97436 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC17.54■□□□□ 0.4
Nkx3-1P97436 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Nkx3-1P97436 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Nkx3-1P97436 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Nkx3-1P97436 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Nkx3-1P97436 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Nkx3-1P97436 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC17.53■□□□□ 0.4
Nkx3-1P97436 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC17.53■□□□□ 0.4
Nkx3-1P97436 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Nkx3-1P97436 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Nkx3-1P97436 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Nkx3-1P97436 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Nkx3-1P97436 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Nkx3-1P97436 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Nkx3-1P97436 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms