Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 HNRNPA1P32-201ENST00000396326 963 ntBASIC15.47■□□□□ 0.07
CISHQ9NSE2 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 NKAIN1P1-201ENST00000435754 582 ntBASIC15.47■□□□□ 0.07
CISHQ9NSE2 AC106794.1-201ENST00000506935 792 ntBASIC15.47■□□□□ 0.07
CISHQ9NSE2 AC005740.2-201ENST00000511085 419 ntBASIC15.47■□□□□ 0.07
CISHQ9NSE2 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 AC021016.3-201ENST00000608367 477 ntBASIC15.47■□□□□ 0.07
CISHQ9NSE2 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 AC018629.1-201ENST00000623381 1736 ntBASIC15.47■□□□□ 0.07
CISHQ9NSE2 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
CISHQ9NSE2 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.47■□□□□ 0.07
CISHQ9NSE2 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 AL928921.2-201ENST00000641325 2442 ntBASIC15.46■□□□□ 0.07
CISHQ9NSE2 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 XBP1P1-201ENST00000436573 652 ntBASIC15.46■□□□□ 0.07
CISHQ9NSE2 AC006033.1-201ENST00000440505 426 ntBASIC15.46■□□□□ 0.07
CISHQ9NSE2 OR2R1P-201ENST00000441404 914 ntBASIC15.46■□□□□ 0.07
CISHQ9NSE2 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 AC013355.1-201ENST00000562625 723 ntBASIC15.46■□□□□ 0.07
CISHQ9NSE2 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 AL136295.7-201ENST00000619226 1200 ntBASIC15.46■□□□□ 0.07
CISHQ9NSE2 AC092299.1-201ENST00000632679 757 ntBASIC15.46■□□□□ 0.07
CISHQ9NSE2 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 TCAM1P-207ENST00000485295 1537 ntBASIC15.46■□□□□ 0.07
CISHQ9NSE2 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CISHQ9NSE2 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.46■□□□□ 0.07
CISHQ9NSE2 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
CISHQ9NSE2 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CISHQ9NSE2 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CISHQ9NSE2 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CISHQ9NSE2 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.46■□□□□ 0.06
CISHQ9NSE2 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CISHQ9NSE2 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
CISHQ9NSE2 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CISHQ9NSE2 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CISHQ9NSE2 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.45■□□□□ 0.06
CISHQ9NSE2 AHCYP4-201ENST00000419201 1315 ntBASIC15.45■□□□□ 0.06
CISHQ9NSE2 TUBB8P4-201ENST00000511806 1324 ntBASIC15.45■□□□□ 0.06
CISHQ9NSE2 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms