Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 AL590440.2-201ENST00000641973 1595 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
ABCA4P78363 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.53□□□□□ -0.4
ABCA4P78363 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 AC144831.1-201ENST00000573312 2656 ntBASIC12.53□□□□□ -0.4
ABCA4P78363 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC12.53□□□□□ -0.4
ABCA4P78363 AL357563.1-201ENST00000404728 395 ntBASIC12.53□□□□□ -0.4
ABCA4P78363 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 PSMD4P1-201ENST00000433951 1109 ntBASIC12.53□□□□□ -0.4
ABCA4P78363 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC12.53□□□□□ -0.4
ABCA4P78363 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC12.53□□□□□ -0.4
ABCA4P78363 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC12.53□□□□□ -0.4
ABCA4P78363 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
ABCA4P78363 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC12.53□□□□□ -0.4
ABCA4P78363 FO393412.1-201ENST00000619841 382 ntBASIC12.53□□□□□ -0.4
ABCA4P78363 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC12.53□□□□□ -0.4
ABCA4P78363 LINC00431-202ENST00000636375 159 ntBASIC12.53□□□□□ -0.4
ABCA4P78363 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC12.53□□□□□ -0.4
ABCA4P78363 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC12.53□□□□□ -0.4
ABCA4P78363 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 IL9RP3-201ENST00000442856 1674 ntBASIC12.53□□□□□ -0.4
ABCA4P78363 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC12.53□□□□□ -0.4
ABCA4P78363 MARK2P16-201ENST00000605714 1723 ntBASIC12.53□□□□□ -0.4
ABCA4P78363 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 AP002353.1-201ENST00000528257 1599 ntBASIC12.53□□□□□ -0.4
ABCA4P78363 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC12.53□□□□□ -0.4
ABCA4P78363 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 ALG1L13P-202ENST00000519320 584 ntBASIC12.53□□□□□ -0.4
ABCA4P78363 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC12.53□□□□□ -0.4
ABCA4P78363 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 AC092299.1-201ENST00000632679 757 ntBASIC12.53□□□□□ -0.4
ABCA4P78363 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
ABCA4P78363 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ABCA4P78363 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.52□□□□□ -0.4
ABCA4P78363 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
ABCA4P78363 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
ABCA4P78363 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC12.52□□□□□ -0.4
ABCA4P78363 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC12.52□□□□□ -0.4
ABCA4P78363 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
ABCA4P78363 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
ABCA4P78363 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
ABCA4P78363 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC12.52□□□□□ -0.4
ABCA4P78363 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
ABCA4P78363 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.52□□□□□ -0.4
ABCA4P78363 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
ABCA4P78363 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC12.52□□□□□ -0.4
ABCA4P78363 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
ABCA4P78363 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.52□□□□□ -0.41
ABCA4P78363 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ABCA4P78363 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ABCA4P78363 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ABCA4P78363 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.52□□□□□ -0.41
ABCA4P78363 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
ABCA4P78363 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ABCA4P78363 MBP-201ENST00000354542 575 ntTSL 2 BASIC12.52□□□□□ -0.41
ABCA4P78363 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC12.52□□□□□ -0.41
ABCA4P78363 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC12.52□□□□□ -0.41
ABCA4P78363 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC12.52□□□□□ -0.41
ABCA4P78363 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC12.52□□□□□ -0.41
ABCA4P78363 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC12.52□□□□□ -0.41
ABCA4P78363 RN7SL81P-201ENST00000493781 261 ntBASIC12.52□□□□□ -0.41
ABCA4P78363 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC12.52□□□□□ -0.41
ABCA4P78363 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
ABCA4P78363 MIR3180-2-201ENST00000581748 88 ntBASIC12.52□□□□□ -0.41
ABCA4P78363 RN7SL596P-201ENST00000582123 288 ntBASIC12.52□□□□□ -0.41
ABCA4P78363 RN7SL470P-201ENST00000583069 259 ntBASIC12.52□□□□□ -0.41
ABCA4P78363 AC103810.10-201ENST00000606504 343 ntBASIC12.52□□□□□ -0.41
ABCA4P78363 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC12.52□□□□□ -0.41
ABCA4P78363 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC12.52□□□□□ -0.41
ABCA4P78363 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
ABCA4P78363 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
ABCA4P78363 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
ABCA4P78363 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
ABCA4P78363 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms