Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.01□□□□□ -0.33
MMP28Q9H239 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
MMP28Q9H239 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
MMP28Q9H239 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC13.01□□□□□ -0.33
MMP28Q9H239 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
MMP28Q9H239 KLF2P3-201ENST00000451977 1087 ntBASIC13.01□□□□□ -0.33
MMP28Q9H239 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.01□□□□□ -0.33
MMP28Q9H239 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
MMP28Q9H239 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC13.01□□□□□ -0.33
MMP28Q9H239 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.01□□□□□ -0.33
MMP28Q9H239 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC13.01□□□□□ -0.33
MMP28Q9H239 COQ4-205ENST00000609948 956 ntTSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
MMP28Q9H239 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
MMP28Q9H239 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
MMP28Q9H239 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.01□□□□□ -0.33
MMP28Q9H239 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.01□□□□□ -0.33
MMP28Q9H239 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
MMP28Q9H239 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13□□□□□ -0.33
MMP28Q9H239 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC13□□□□□ -0.33
MMP28Q9H239 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
MMP28Q9H239 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
MMP28Q9H239 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13□□□□□ -0.33
MMP28Q9H239 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13□□□□□ -0.33
MMP28Q9H239 IMPDH1P4-201ENST00000445028 1534 ntBASIC13□□□□□ -0.33
MMP28Q9H239 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC13□□□□□ -0.33
MMP28Q9H239 KRT8P12-202ENST00000472924 1397 ntBASIC13□□□□□ -0.33
MMP28Q9H239 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13□□□□□ -0.33
MMP28Q9H239 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC13□□□□□ -0.33
MMP28Q9H239 BAD-202ENST00000394531 631 ntTSL 3 BASIC13□□□□□ -0.33
MMP28Q9H239 MIR943-201ENST00000401286 94 ntBASIC13□□□□□ -0.33
MMP28Q9H239 FO393414.2-201ENST00000405153 598 ntBASIC13□□□□□ -0.33
MMP28Q9H239 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
MMP28Q9H239 AC107890.1-201ENST00000422478 521 ntBASIC13□□□□□ -0.33
MMP28Q9H239 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC13□□□□□ -0.33
MMP28Q9H239 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13□□□□□ -0.33
MMP28Q9H239 INGX-202ENST00000489074 768 ntBASIC13□□□□□ -0.33
MMP28Q9H239 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13□□□□□ -0.33
MMP28Q9H239 AC069120.2-201ENST00000524091 540 ntBASIC13□□□□□ -0.33
MMP28Q9H239 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC13□□□□□ -0.33
MMP28Q9H239 BAD-207ENST00000544785 525 ntTSL 3 BASIC13□□□□□ -0.33
MMP28Q9H239 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC13□□□□□ -0.33
MMP28Q9H239 AQP6-203ENST00000551733 849 ntTSL 3 BASIC13□□□□□ -0.33
MMP28Q9H239 SUOX-214ENST00000551841 906 ntTSL 3 BASIC13□□□□□ -0.33
MMP28Q9H239 AL079307.3-201ENST00000556114 283 ntBASIC13□□□□□ -0.33
MMP28Q9H239 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC13□□□□□ -0.33
MMP28Q9H239 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC13□□□□□ -0.33
MMP28Q9H239 GPER1-207ENST00000619052 571 ntTSL 2 BASIC13□□□□□ -0.33
MMP28Q9H239 AJ011932.1-201ENST00000621707 465 ntBASIC13□□□□□ -0.33
MMP28Q9H239 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms