Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC17.97■□□□□ 0.47
SYNE4Q8N205 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SYNE4Q8N205 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC17.97■□□□□ 0.47
SYNE4Q8N205 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SYNE4Q8N205 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 LAP3P2-201ENST00000454686 1454 ntBASIC17.96■□□□□ 0.47
SYNE4Q8N205 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 RPL18AP8-201ENST00000486071 528 ntBASIC17.96■□□□□ 0.47
SYNE4Q8N205 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 AC007952.4-201ENST00000573866 637 ntBASIC17.96■□□□□ 0.47
SYNE4Q8N205 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 MIR5196-201ENST00000578146 115 ntBASIC17.96■□□□□ 0.47
SYNE4Q8N205 NUDT4P2-201ENST00000578341 546 ntBASIC17.96■□□□□ 0.47
SYNE4Q8N205 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 AC021016.3-201ENST00000608367 477 ntBASIC17.96■□□□□ 0.47
SYNE4Q8N205 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE4Q8N205 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.96■□□□□ 0.47
SYNE4Q8N205 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
SYNE4Q8N205 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC17.96■□□□□ 0.46
SYNE4Q8N205 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SYNE4Q8N205 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE4Q8N205 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE4Q8N205 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE4Q8N205 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE4Q8N205 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 AC092638.2-201ENST00000441105 947 ntBASIC17.95■□□□□ 0.46
SYNE4Q8N205 AL354861.1-201ENST00000445213 355 ntBASIC17.95■□□□□ 0.46
SYNE4Q8N205 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE4Q8N205 NSD1-211ENST00000511258 809 ntTSL 3 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE4Q8N205 AC005586.2-201ENST00000563946 837 ntBASIC17.95■□□□□ 0.46
SYNE4Q8N205 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 AL022344.2-201ENST00000568976 968 ntBASIC17.95■□□□□ 0.46
SYNE4Q8N205 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 RN7SL470P-201ENST00000583069 259 ntBASIC17.95■□□□□ 0.46
SYNE4Q8N205 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 FO393412.1-201ENST00000619841 382 ntBASIC17.95■□□□□ 0.46
SYNE4Q8N205 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE4Q8N205 AC232323.1-201ENST00000540724 2099 ntBASIC17.95■□□□□ 0.46
SYNE4Q8N205 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE4Q8N205 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.95■□□□□ 0.46
SYNE4Q8N205 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE4Q8N205 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE4Q8N205 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
SYNE4Q8N205 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE4Q8N205 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE4Q8N205 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE4Q8N205 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE4Q8N205 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE4Q8N205 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE4Q8N205 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
SYNE4Q8N205 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
SYNE4Q8N205 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
SYNE4Q8N205 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.94■□□□□ 0.46
SYNE4Q8N205 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE4Q8N205 AL357563.1-201ENST00000404728 395 ntBASIC17.94■□□□□ 0.46
SYNE4Q8N205 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC17.94■□□□□ 0.46
SYNE4Q8N205 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms