Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC027612.2-202ENST00000445955 1199 ntBASIC15.78■□□□□ 0.12
LRCH3Q96II8 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 AC092862.1-201ENST00000541534 533 ntBASIC15.78■□□□□ 0.12
LRCH3Q96II8 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 AC008972.2-201ENST00000606587 494 ntBASIC15.78■□□□□ 0.12
LRCH3Q96II8 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 API5-208ENST00000531273 1868 ntTSL 2 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.78■□□□□ 0.12
LRCH3Q96II8 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LRCH3Q96II8 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 AL121949.3-201ENST00000406684 385 ntBASIC15.77■□□□□ 0.12
LRCH3Q96II8 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 RN7SL288P-201ENST00000490496 291 ntBASIC15.77■□□□□ 0.12
LRCH3Q96II8 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 RNA5SP406-201ENST00000516106 112 ntBASIC15.77■□□□□ 0.12
LRCH3Q96II8 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRCH3Q96II8 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC15.77■□□□□ 0.12
LRCH3Q96II8 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.77■□□□□ 0.11
LRCH3Q96II8 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.77■□□□□ 0.11
LRCH3Q96II8 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.77■□□□□ 0.11
LRCH3Q96II8 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LRCH3Q96II8 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LRCH3Q96II8 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LRCH3Q96II8 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
LRCH3Q96II8 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LRCH3Q96II8 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LRCH3Q96II8 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LRCH3Q96II8 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LRCH3Q96II8 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.76■□□□□ 0.11
LRCH3Q96II8 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.76■□□□□ 0.11
LRCH3Q96II8 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRCH3Q96II8 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
LRCH3Q96II8 HLF-202ENST00000430986 1385 ntTSL 2 BASIC15.76■□□□□ 0.11
LRCH3Q96II8 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.76■□□□□ 0.11
LRCH3Q96II8 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LRCH3Q96II8 TNRC18P2-201ENST00000417666 2714 ntBASIC15.76■□□□□ 0.11
LRCH3Q96II8 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LRCH3Q96II8 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.76■□□□□ 0.11
LRCH3Q96II8 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
LRCH3Q96II8 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRCH3Q96II8 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.76■□□□□ 0.11
LRCH3Q96II8 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRCH3Q96II8 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.76■□□□□ 0.11
LRCH3Q96II8 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRCH3Q96II8 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRCH3Q96II8 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LRCH3Q96II8 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
LRCH3Q96II8 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LRCH3Q96II8 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms