Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 LINC00528-201ENST00000600723 2160 ntBASIC14.16□□□□□ -0.14
COL28A1Q2UY09 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 AC106881.1-201ENST00000605849 3329 ntBASIC14.16□□□□□ -0.14
COL28A1Q2UY09 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 DDX39AP1-201ENST00000445147 1181 ntBASIC14.16□□□□□ -0.14
COL28A1Q2UY09 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 AP003171.2-201ENST00000528208 925 ntBASIC14.16□□□□□ -0.14
COL28A1Q2UY09 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 AC018695.6-201ENST00000614011 534 ntBASIC14.16□□□□□ -0.14
COL28A1Q2UY09 MIR6858-201ENST00000620733 67 ntBASIC14.16□□□□□ -0.14
COL28A1Q2UY09 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.16□□□□□ -0.14
COL28A1Q2UY09 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL28A1Q2UY09 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 RCC2P8-201ENST00000502779 1035 ntBASIC14.15□□□□□ -0.14
COL28A1Q2UY09 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL28A1Q2UY09 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.15
COL28A1Q2UY09 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms