Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGB1P09429 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HMGB1P09429 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HMGB1P09429 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HMGB1P09429 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HMGB1P09429 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB1P09429 AL023775.1-201ENST00000454907 1746 ntBASIC17.28■□□□□ 0.36
HMGB1P09429 AL359881.3-201ENST00000602640 1721 ntBASIC17.28■□□□□ 0.36
HMGB1P09429 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB1P09429 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HMGB1P09429 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 FAM58BP-201ENST00000439056 645 ntBASIC17.28■□□□□ 0.36
HMGB1P09429 GPR53P-205ENST00000457298 1084 ntBASIC17.28■□□□□ 0.36
HMGB1P09429 ACA64.2-201ENST00000459014 129 ntBASIC17.28■□□□□ 0.36
HMGB1P09429 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.28■□□□□ 0.36
HMGB1P09429 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.28■□□□□ 0.36
HMGB1P09429 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB1P09429 DUX4L45-201ENST00000566406 1057 ntBASIC17.28■□□□□ 0.36
HMGB1P09429 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB1P09429 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
HMGB1P09429 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB1P09429 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB1P09429 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HMGB1P09429 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB1P09429 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HMGB1P09429 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB1P09429 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGB1P09429 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
HMGB1P09429 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC17.27■□□□□ 0.36
HMGB1P09429 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGB1P09429 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 ANKRD19P-201ENST00000338192 862 ntBASIC17.27■□□□□ 0.36
HMGB1P09429 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.27■□□□□ 0.36
HMGB1P09429 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGB1P09429 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGB1P09429 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 CSF2RBP1-201ENST00000447905 391 ntBASIC17.27■□□□□ 0.36
HMGB1P09429 AC100850.1-201ENST00000506768 649 ntBASIC17.27■□□□□ 0.36
HMGB1P09429 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.27■□□□□ 0.36
HMGB1P09429 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGB1P09429 AP005482.1-201ENST00000563722 1273 ntBASIC17.27■□□□□ 0.36
HMGB1P09429 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGB1P09429 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.27■□□□□ 0.36
HMGB1P09429 AC009955.4-201ENST00000597192 544 ntBASIC17.27■□□□□ 0.36
HMGB1P09429 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
HMGB1P09429 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
HMGB1P09429 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB1P09429 E2F3P2-201ENST00000447755 1422 ntBASIC17.27■□□□□ 0.35
HMGB1P09429 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB1P09429 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
HMGB1P09429 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB1P09429 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
HMGB1P09429 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.35
HMGB1P09429 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB1P09429 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.27■□□□□ 0.35
HMGB1P09429 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB1P09429 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB1P09429 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HMGB1P09429 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HMGB1P09429 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
HMGB1P09429 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGB1P09429 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms