Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ERCC4Q92889 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
ERCC4Q92889 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC16.72■□□□□ 0.27
ERCC4Q92889 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ERCC4Q92889 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC16.72■□□□□ 0.27
ERCC4Q92889 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
ERCC4Q92889 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC16.72■□□□□ 0.27
ERCC4Q92889 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.72■□□□□ 0.27
ERCC4Q92889 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 FO681548.1-201ENST00000455617 1132 ntBASIC16.72■□□□□ 0.27
ERCC4Q92889 AC104596.2-201ENST00000512793 793 ntBASIC16.72■□□□□ 0.27
ERCC4Q92889 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
ERCC4Q92889 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.72■□□□□ 0.27
ERCC4Q92889 RRP7BP-205ENST00000566851 833 ntBASIC16.72■□□□□ 0.27
ERCC4Q92889 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
ERCC4Q92889 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.72■□□□□ 0.27
ERCC4Q92889 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ERCC4Q92889 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC16.72■□□□□ 0.27
ERCC4Q92889 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.72■□□□□ 0.27
ERCC4Q92889 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ERCC4Q92889 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
ERCC4Q92889 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
ERCC4Q92889 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
ERCC4Q92889 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
ERCC4Q92889 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
ERCC4Q92889 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 AC015688.4-201ENST00000580780 1647 ntBASIC16.71■□□□□ 0.27
ERCC4Q92889 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
ERCC4Q92889 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.71■□□□□ 0.27
ERCC4Q92889 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.71■□□□□ 0.27
ERCC4Q92889 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 MIR661-201ENST00000384842 89 ntBASIC16.71■□□□□ 0.27
ERCC4Q92889 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
ERCC4Q92889 AC114812.1-204ENST00000449669 728 ntBASIC16.71■□□□□ 0.27
ERCC4Q92889 AC093004.1-201ENST00000508850 424 ntBASIC16.71■□□□□ 0.27
ERCC4Q92889 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.71■□□□□ 0.27
ERCC4Q92889 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.71■□□□□ 0.27
ERCC4Q92889 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.71■□□□□ 0.27
ERCC4Q92889 AC093726.1-201ENST00000608064 963 ntBASIC16.71■□□□□ 0.27
ERCC4Q92889 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ERCC4Q92889 AC020910.6-201ENST00000623084 1459 ntBASIC16.71■□□□□ 0.27
ERCC4Q92889 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ERCC4Q92889 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ERCC4Q92889 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC16.71■□□□□ 0.27
ERCC4Q92889 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
ERCC4Q92889 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC16.71■□□□□ 0.27
ERCC4Q92889 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
ERCC4Q92889 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
ERCC4Q92889 AC111170.3-201ENST00000624282 2464 ntBASIC16.71■□□□□ 0.26
ERCC4Q92889 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
ERCC4Q92889 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
ERCC4Q92889 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
ERCC4Q92889 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC16.71■□□□□ 0.26
ERCC4Q92889 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
ERCC4Q92889 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
ERCC4Q92889 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 LRRC59-203ENST00000576448 1531 ntBASIC16.7■□□□□ 0.26
ERCC4Q92889 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.7■□□□□ 0.26
ERCC4Q92889 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms