Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN9P43378 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PTPN9P43378 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
PTPN9P43378 AC136759.1-202ENST00000530858 2194 ntBASIC15.24■□□□□ 0.03
PTPN9P43378 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
PTPN9P43378 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN9P43378 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN9P43378 GRK6P1-201ENST00000400595 1711 ntBASIC15.23■□□□□ 0.03
PTPN9P43378 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.23■□□□□ 0.03
PTPN9P43378 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 AL008718.2-201ENST00000609206 1313 ntBASIC15.23■□□□□ 0.03
PTPN9P43378 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PTPN9P43378 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.23■□□□□ 0.03
PTPN9P43378 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
PTPN9P43378 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 MTX1P1-201ENST00000440904 838 ntBASIC15.23■□□□□ 0.03
PTPN9P43378 AC012441.2-201ENST00000444843 739 ntBASIC15.23■□□□□ 0.03
PTPN9P43378 KLF2P1-201ENST00000447438 1042 ntBASIC15.23■□□□□ 0.03
PTPN9P43378 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.23■□□□□ 0.03
PTPN9P43378 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PTPN9P43378 FAM86HP-204ENST00000513466 959 ntBASIC15.23■□□□□ 0.03
PTPN9P43378 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.23■□□□□ 0.03
PTPN9P43378 AL583810.1-201ENST00000553344 1045 ntBASIC15.23■□□□□ 0.03
PTPN9P43378 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN9P43378 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 RN7SL560P-201ENST00000577943 264 ntBASIC15.23■□□□□ 0.03
PTPN9P43378 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.23■□□□□ 0.03
PTPN9P43378 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
PTPN9P43378 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
PTPN9P43378 AL161772.1-201ENST00000610494 4412 ntBASIC15.23■□□□□ 0.03
PTPN9P43378 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN9P43378 OR2I1P-210ENST00000642037 4691 ntBASIC15.23■□□□□ 0.03
PTPN9P43378 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.23■□□□□ 0.03
PTPN9P43378 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN9P43378 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN9P43378 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN9P43378 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.23■□□□□ 0.03
PTPN9P43378 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN9P43378 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 TCAM1P-207ENST00000485295 1537 ntBASIC15.22■□□□□ 0.03
PTPN9P43378 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.22■□□□□ 0.03
PTPN9P43378 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 OR2I1P-209ENST00000641730 5365 ntBASIC15.22■□□□□ 0.03
PTPN9P43378 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
PTPN9P43378 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 HSPA8P5-201ENST00000456928 2069 ntBASIC15.22■□□□□ 0.03
PTPN9P43378 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.22■□□□□ 0.03
PTPN9P43378 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.22■□□□□ 0.03
PTPN9P43378 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC15.22■□□□□ 0.03
PTPN9P43378 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
PTPN9P43378 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 AC009884.2-201ENST00000603110 324 ntBASIC15.22■□□□□ 0.03
PTPN9P43378 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
PTPN9P43378 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms