Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.66■□□□□ 0.1
CISHQ9NSE2 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.66■□□□□ 0.1
CISHQ9NSE2 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.66■□□□□ 0.1
CISHQ9NSE2 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.66■□□□□ 0.1
CISHQ9NSE2 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.66■□□□□ 0.1
CISHQ9NSE2 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
CISHQ9NSE2 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CISHQ9NSE2 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.66■□□□□ 0.1
CISHQ9NSE2 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CISHQ9NSE2 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.66■□□□□ 0.1
CISHQ9NSE2 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 TMBIM7P-202ENST00000641474 1516 ntBASIC15.65■□□□□ 0.1
CISHQ9NSE2 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.65■□□□□ 0.1
CISHQ9NSE2 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 AC005730.2-201ENST00000564549 1184 ntBASIC15.65■□□□□ 0.1
CISHQ9NSE2 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.65■□□□□ 0.1
CISHQ9NSE2 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.65■□□□□ 0.1
CISHQ9NSE2 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CISHQ9NSE2 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
CISHQ9NSE2 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.64■□□□□ 0.1
CISHQ9NSE2 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
CISHQ9NSE2 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CISHQ9NSE2 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CISHQ9NSE2 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CISHQ9NSE2 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CISHQ9NSE2 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CISHQ9NSE2 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CISHQ9NSE2 MIR663B-201ENST00000408361 115 ntBASIC15.64■□□□□ 0.09
CISHQ9NSE2 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CISHQ9NSE2 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CISHQ9NSE2 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.64■□□□□ 0.09
CISHQ9NSE2 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.64■□□□□ 0.09
CISHQ9NSE2 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms