Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AC024681.1-201ENST00000521917 487 ntBASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AC100827.2-201ENST00000563214 1194 ntBASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AL162426.1-201ENST00000624141 743 ntBASIC16.03■□□□□ 0.16
VPS52Q8N1B4 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AL137783.1-201ENST00000623494 1896 ntBASIC16.03■□□□□ 0.16
VPS52Q8N1B4 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 INE2-201ENST00000630399 1874 ntBASIC16.02■□□□□ 0.16
VPS52Q8N1B4 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 ACTG1P2-201ENST00000415776 1125 ntBASIC16.02■□□□□ 0.16
VPS52Q8N1B4 ACTG1P11-201ENST00000425411 1125 ntBASIC16.02■□□□□ 0.16
VPS52Q8N1B4 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.02■□□□□ 0.16
VPS52Q8N1B4 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 AC134698.3-201ENST00000523880 214 ntBASIC16.02■□□□□ 0.16
VPS52Q8N1B4 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS52Q8N1B4 AC007292.2-201ENST00000593524 1812 ntBASIC16.02■□□□□ 0.16
VPS52Q8N1B4 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS52Q8N1B4 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 CNTNAP3P2-201ENST00000617175 3861 ntBASIC16.01■□□□□ 0.15
VPS52Q8N1B4 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 AGAP7P-201ENST00000582299 2062 ntBASIC16.01■□□□□ 0.15
VPS52Q8N1B4 AGAP14-201ENST00000624701 2060 ntBASIC16.01■□□□□ 0.15
VPS52Q8N1B4 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS52Q8N1B4 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms