Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC19.94■□□□□ 0.78
MSH6P52701 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC19.94■□□□□ 0.78
MSH6P52701 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC19.94■□□□□ 0.78
MSH6P52701 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
MSH6P52701 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH6P52701 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH6P52701 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH6P52701 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
MSH6P52701 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH6P52701 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH6P52701 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH6P52701 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH6P52701 OR6D1P-203ENST00000641209 4860 ntBASIC19.93■□□□□ 0.78
MSH6P52701 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH6P52701 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH6P52701 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH6P52701 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH6P52701 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH6P52701 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH6P52701 PSAT1P2-201ENST00000426107 972 ntBASIC19.93■□□□□ 0.78
MSH6P52701 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC19.93■□□□□ 0.78
MSH6P52701 NRADDP-201ENST00000437305 691 ntBASIC19.93■□□□□ 0.78
MSH6P52701 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC19.93■□□□□ 0.78
MSH6P52701 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC19.93■□□□□ 0.78
MSH6P52701 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH6P52701 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH6P52701 SKA2-205ENST00000580541 689 ntTSL 3 BASIC19.93■□□□□ 0.78
MSH6P52701 AL021707.6-201ENST00000609212 491 ntBASIC19.93■□□□□ 0.78
MSH6P52701 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH6P52701 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH6P52701 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH6P52701 STRN-202ENST00000379213 2254 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH6P52701 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
MSH6P52701 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 ODCP-201ENST00000459650 1639 ntBASIC19.92■□□□□ 0.78
MSH6P52701 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
MSH6P52701 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH6P52701 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
MSH6P52701 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
MSH6P52701 SNORA57-201ENST00000383870 149 ntBASIC19.92■□□□□ 0.78
MSH6P52701 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
MSH6P52701 LINC00265-2P-201ENST00000413372 782 ntBASIC19.92■□□□□ 0.78
MSH6P52701 OR52M2P-201ENST00000414298 959 ntBASIC19.92■□□□□ 0.78
MSH6P52701 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 GALP-202ENST00000440823 889 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH6P52701 GOLGA6L16P-201ENST00000441780 1299 ntBASIC19.92■□□□□ 0.78
MSH6P52701 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC19.92■□□□□ 0.78
MSH6P52701 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC19.92■□□□□ 0.78
MSH6P52701 HNRNPA1P5-201ENST00000558213 966 ntBASIC19.92■□□□□ 0.78
MSH6P52701 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 COQ4-204ENST00000608951 781 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 RARS-210ENST00000626454 177 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH6P52701 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
MSH6P52701 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH6P52701 API5-203ENST00000455725 2257 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC19.91■□□□□ 0.78
MSH6P52701 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms