Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.35□□□□□ -0.11
HNF4AP41235 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 AC016694.1-201ENST00000434179 700 ntBASIC14.35□□□□□ -0.11
HNF4AP41235 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
HNF4AP41235 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.35□□□□□ -0.11
HNF4AP41235 AC025279.2-201ENST00000569730 653 ntBASIC14.35□□□□□ -0.11
HNF4AP41235 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
HNF4AP41235 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HNF4AP41235 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.34□□□□□ -0.11
HNF4AP41235 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
HNF4AP41235 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.34□□□□□ -0.11
HNF4AP41235 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 AC112492.5-201ENST00000421897 457 ntBASIC14.34□□□□□ -0.11
HNF4AP41235 FAM197Y7-201ENST00000432892 766 ntBASIC14.34□□□□□ -0.11
HNF4AP41235 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
HNF4AP41235 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.34□□□□□ -0.11
HNF4AP41235 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
HNF4AP41235 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.34□□□□□ -0.11
HNF4AP41235 RAB43P1-201ENST00000561790 589 ntBASIC14.34□□□□□ -0.11
HNF4AP41235 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.34□□□□□ -0.11
HNF4AP41235 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.34□□□□□ -0.11
HNF4AP41235 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.34□□□□□ -0.11
HNF4AP41235 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HNF4AP41235 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
HNF4AP41235 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.34□□□□□ -0.11
HNF4AP41235 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
HNF4AP41235 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.34□□□□□ -0.11
HNF4AP41235 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 AC011840.2-201ENST00000563063 1520 ntBASIC14.34□□□□□ -0.11
HNF4AP41235 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HNF4AP41235 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.34□□□□□ -0.11
HNF4AP41235 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 FKBP4P6-201ENST00000457486 1332 ntBASIC14.34□□□□□ -0.11
HNF4AP41235 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.34□□□□□ -0.11
HNF4AP41235 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.34□□□□□ -0.11
HNF4AP41235 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.34□□□□□ -0.11
HNF4AP41235 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HNF4AP41235 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
HNF4AP41235 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.33□□□□□ -0.11
HNF4AP41235 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
HNF4AP41235 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HNF4AP41235 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.33□□□□□ -0.11
HNF4AP41235 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HNF4AP41235 HSPA7-201ENST00000445535 1927 ntBASIC14.33□□□□□ -0.11
HNF4AP41235 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.33□□□□□ -0.11
HNF4AP41235 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HNF4AP41235 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HNF4AP41235 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HNF4AP41235 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.33□□□□□ -0.12
HNF4AP41235 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HNF4AP41235 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HNF4AP41235 AC005252.3-201ENST00000623855 2258 ntBASIC14.33□□□□□ -0.12
HNF4AP41235 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HNF4AP41235 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
HNF4AP41235 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms