Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AL645939.5-201ENST00000606834 243 ntBASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AC026740.1-201ENST00000607068 791 ntBASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 TMBIM7P-202ENST00000641474 1516 ntBASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 AL161772.1-201ENST00000610494 4412 ntBASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 XBP1P1-201ENST00000436573 652 ntBASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 AC005586.2-201ENST00000563946 837 ntBASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 NAP1L6-202ENST00000641404 1222 ntBASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 MX1-218ENST00000619682 1980 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4AQ9BY43 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 AC126755.1-201ENST00000525846 6405 ntBASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 AC006335.1-201ENST00000445200 547 ntBASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 SORD2P-201ENST00000558556 1069 ntBASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4AQ9BY43 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms