Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.56□□□□□ -0.08
PKNOX1P55347 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
PKNOX1P55347 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 GIMAP3P-201ENST00000495150 836 ntBASIC14.56□□□□□ -0.08
PKNOX1P55347 AP001582.1-201ENST00000525856 295 ntBASIC14.56□□□□□ -0.08
PKNOX1P55347 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.56□□□□□ -0.08
PKNOX1P55347 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.56□□□□□ -0.08
PKNOX1P55347 AC124283.3-201ENST00000570869 594 ntBASIC14.56□□□□□ -0.08
PKNOX1P55347 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.56□□□□□ -0.08
PKNOX1P55347 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.56□□□□□ -0.08
PKNOX1P55347 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.56□□□□□ -0.08
PKNOX1P55347 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 AC092364.2-202ENST00000597012 1073 ntBASIC14.56□□□□□ -0.08
PKNOX1P55347 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.56□□□□□ -0.08
PKNOX1P55347 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 AC093726.1-201ENST00000608064 963 ntBASIC14.56□□□□□ -0.08
PKNOX1P55347 AC106028.4-201ENST00000614509 607 ntBASIC14.56□□□□□ -0.08
PKNOX1P55347 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.56□□□□□ -0.08
PKNOX1P55347 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
PKNOX1P55347 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
PKNOX1P55347 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
PKNOX1P55347 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
PKNOX1P55347 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
PKNOX1P55347 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 PPT1-213ENST00000641319 2388 ntBASIC14.55□□□□□ -0.08
PKNOX1P55347 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.55□□□□□ -0.08
PKNOX1P55347 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
PKNOX1P55347 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.55□□□□□ -0.08
PKNOX1P55347 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 KLF2P2-201ENST00000416807 1039 ntBASIC14.55□□□□□ -0.08
PKNOX1P55347 SOCS2P1-201ENST00000417727 557 ntBASIC14.55□□□□□ -0.08
PKNOX1P55347 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.55□□□□□ -0.08
PKNOX1P55347 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.55□□□□□ -0.08
PKNOX1P55347 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.55□□□□□ -0.08
PKNOX1P55347 AC007969.1-201ENST00000433675 447 ntBASIC14.55□□□□□ -0.08
PKNOX1P55347 GNAQP1-201ENST00000444815 1067 ntBASIC14.55□□□□□ -0.08
PKNOX1P55347 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 AC026434.2-201ENST00000506094 1078 ntBASIC14.55□□□□□ -0.08
PKNOX1P55347 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.55□□□□□ -0.08
PKNOX1P55347 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.55□□□□□ -0.08
PKNOX1P55347 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.55□□□□□ -0.08
PKNOX1P55347 MIR8072-201ENST00000614241 80 ntBASIC14.55□□□□□ -0.08
PKNOX1P55347 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.55□□□□□ -0.08
PKNOX1P55347 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.55□□□□□ -0.08
PKNOX1P55347 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.55□□□□□ -0.08
PKNOX1P55347 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.55□□□□□ -0.08
PKNOX1P55347 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
PKNOX1P55347 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms