Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC23.88■■□□□ 1.41
CUX1P39880 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC23.88■■□□□ 1.41
CUX1P39880 RN7SL128P-201ENST00000467883 305 ntBASIC23.88■■□□□ 1.41
CUX1P39880 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC23.88■■□□□ 1.41
CUX1P39880 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 AC013268.4-201ENST00000637413 2228 ntBASIC23.88■■□□□ 1.41
CUX1P39880 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC23.88■■□□□ 1.41
CUX1P39880 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
CUX1P39880 CICP6-201ENST00000457191 2729 ntBASIC23.87■■□□□ 1.41
CUX1P39880 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
CUX1P39880 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
CUX1P39880 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC23.87■■□□□ 1.41
CUX1P39880 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC23.87■■□□□ 1.41
CUX1P39880 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC23.87■■□□□ 1.41
CUX1P39880 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC23.87■■□□□ 1.41
CUX1P39880 RPS18P9-201ENST00000482817 460 ntBASIC23.87■■□□□ 1.41
CUX1P39880 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 CES1P2-201ENST00000566467 1242 ntBASIC23.87■■□□□ 1.41
CUX1P39880 AC005274.1-201ENST00000623460 802 ntBASIC23.87■■□□□ 1.41
CUX1P39880 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC23.87■■□□□ 1.41
CUX1P39880 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC23.87■■□□□ 1.41
CUX1P39880 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC23.87■■□□□ 1.41
CUX1P39880 AC006486.2-201ENST00000624246 2199 ntBASIC23.87■■□□□ 1.41
CUX1P39880 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CUX1P39880 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC23.86■■□□□ 1.41
CUX1P39880 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC23.86■■□□□ 1.41
CUX1P39880 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC23.86■■□□□ 1.41
CUX1P39880 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC23.86■■□□□ 1.41
CUX1P39880 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC23.86■■□□□ 1.41
CUX1P39880 ZNF877P-201ENST00000437614 612 ntBASIC23.86■■□□□ 1.41
CUX1P39880 AC092903.1-201ENST00000466506 262 ntBASIC23.86■■□□□ 1.41
CUX1P39880 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC23.86■■□□□ 1.41
CUX1P39880 AC093300.1-201ENST00000510368 1201 ntBASIC23.86■■□□□ 1.41
CUX1P39880 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC23.86■■□□□ 1.41
CUX1P39880 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC23.86■■□□□ 1.41
CUX1P39880 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC23.86■■□□□ 1.41
CUX1P39880 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC23.86■■□□□ 1.41
CUX1P39880 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC23.86■■□□□ 1.41
CUX1P39880 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC23.86■■□□□ 1.41
CUX1P39880 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
CUX1P39880 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CUX1P39880 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
CUX1P39880 AC015909.5-201ENST00000624336 2266 ntBASIC23.85■■□□□ 1.41
CUX1P39880 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CUX1P39880 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CUX1P39880 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CUX1P39880 UROS-201ENST00000368774 744 ntTSL 2 BASIC23.85■■□□□ 1.41
CUX1P39880 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CUX1P39880 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC23.85■■□□□ 1.41
CUX1P39880 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC23.85■■□□□ 1.41
CUX1P39880 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC23.85■■□□□ 1.41
CUX1P39880 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC23.85■■□□□ 1.41
CUX1P39880 NAV1-210ENST00000593583 726 ntBASIC23.85■■□□□ 1.41
CUX1P39880 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC23.85■■□□□ 1.41
CUX1P39880 MIR6074-201ENST00000612054 107 ntBASIC23.85■■□□□ 1.41
CUX1P39880 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC23.85■■□□□ 1.41
CUX1P39880 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC23.85■■□□□ 1.41
CUX1P39880 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC23.85■■□□□ 1.41
CUX1P39880 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC23.85■■□□□ 1.41
CUX1P39880 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC23.85■■□□□ 1.41
CUX1P39880 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
CUX1P39880 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC23.85■■□□□ 1.41
CUX1P39880 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CUX1P39880 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC23.85■■□□□ 1.41
CUX1P39880 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CUX1P39880 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
CUX1P39880 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC23.85■■□□□ 1.41
CUX1P39880 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC23.85■■□□□ 1.41
CUX1P39880 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
CUX1P39880 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 FAM21EP-201ENST00000417804 985 ntBASIC23.84■■□□□ 1.41
CUX1P39880 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC23.84■■□□□ 1.41
CUX1P39880 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC23.84■■□□□ 1.41
CUX1P39880 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC23.84■■□□□ 1.41
CUX1P39880 AC022447.6-201ENST00000515522 438 ntBASIC23.84■■□□□ 1.41
CUX1P39880 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC23.84■■□□□ 1.41
CUX1P39880 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC23.84■■□□□ 1.41
CUX1P39880 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC23.84■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms