Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC20.02■□□□□ 0.8
MSH6P52701 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH6P52701 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH6P52701 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC20.02■□□□□ 0.8
MSH6P52701 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC20.02■□□□□ 0.8
MSH6P52701 AP000354.1-201ENST00000396982 456 ntBASIC20.02■□□□□ 0.8
MSH6P52701 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSH6P52701 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSH6P52701 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC20.02■□□□□ 0.8
MSH6P52701 KRT18P37-201ENST00000520711 1282 ntBASIC20.02■□□□□ 0.8
MSH6P52701 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH6P52701 FUK-207ENST00000571514 3054 ntTSL 2 BASIC20.02■□□□□ 0.8
MSH6P52701 SNORD3B-1-201ENST00000577988 758 ntBASIC20.02■□□□□ 0.8
MSH6P52701 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC20.02■□□□□ 0.8
MSH6P52701 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH6P52701 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
MSH6P52701 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
MSH6P52701 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
MSH6P52701 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
MSH6P52701 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC20.02■□□□□ 0.79
MSH6P52701 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH6P52701 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
MSH6P52701 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH6P52701 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH6P52701 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC20.01■□□□□ 0.79
MSH6P52701 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC20.01■□□□□ 0.79
MSH6P52701 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC20.01■□□□□ 0.79
MSH6P52701 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH6P52701 ASS1P2-201ENST00000439895 1223 ntBASIC20.01■□□□□ 0.79
MSH6P52701 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 HIST1H2APS2-201ENST00000454426 370 ntBASIC20.01■□□□□ 0.79
MSH6P52701 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC20.01■□□□□ 0.79
MSH6P52701 AC023968.2-201ENST00000560593 1049 ntBASIC20.01■□□□□ 0.79
MSH6P52701 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC20.01■□□□□ 0.79
MSH6P52701 NDUFB10P1-201ENST00000567319 521 ntBASIC20.01■□□□□ 0.79
MSH6P52701 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC20.01■□□□□ 0.79
MSH6P52701 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC20.01■□□□□ 0.79
MSH6P52701 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH6P52701 AC092850.2-201ENST00000623821 2697 ntBASIC20.01■□□□□ 0.79
MSH6P52701 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
MSH6P52701 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
MSH6P52701 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC20.01■□□□□ 0.79
MSH6P52701 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC20.01■□□□□ 0.79
MSH6P52701 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH6P52701 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH6P52701 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC20■□□□□ 0.79
MSH6P52701 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 DKFZP434H168-201ENST00000567381 1905 ntBASIC20■□□□□ 0.79
MSH6P52701 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC20■□□□□ 0.79
MSH6P52701 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC20■□□□□ 0.79
MSH6P52701 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC20■□□□□ 0.79
MSH6P52701 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC20■□□□□ 0.79
MSH6P52701 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 PPP1R2P4-201ENST00000424051 595 ntBASIC20■□□□□ 0.79
MSH6P52701 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC20■□□□□ 0.79
MSH6P52701 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 BCRP4-201ENST00000506079 804 ntBASIC20■□□□□ 0.79
MSH6P52701 FBXO36P1-201ENST00000579006 471 ntBASIC20■□□□□ 0.79
MSH6P52701 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 FKBP4P8-201ENST00000610931 1369 ntBASIC20■□□□□ 0.79
MSH6P52701 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC20■□□□□ 0.79
MSH6P52701 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
MSH6P52701 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC20■□□□□ 0.79
MSH6P52701 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC20■□□□□ 0.79
MSH6P52701 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC20■□□□□ 0.79
MSH6P52701 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
MSH6P52701 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC20■□□□□ 0.79
MSH6P52701 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH6P52701 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH6P52701 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH6P52701 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC19.99■□□□□ 0.79
MSH6P52701 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH6P52701 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH6P52701 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH6P52701 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH6P52701 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms