Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC244093.1-201ENST00000610837 814 ntBASIC16.58■□□□□ 0.24
CIITAP33076 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.58■□□□□ 0.24
CIITAP33076 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.58■□□□□ 0.24
CIITAP33076 AC067930.6-201ENST00000623257 4947 ntBASIC16.58■□□□□ 0.24
CIITAP33076 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CIITAP33076 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.58■□□□□ 0.24
CIITAP33076 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.58■□□□□ 0.24
CIITAP33076 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.58■□□□□ 0.24
CIITAP33076 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.58■□□□□ 0.24
CIITAP33076 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CIITAP33076 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.58■□□□□ 0.24
CIITAP33076 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.58■□□□□ 0.24
CIITAP33076 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CIITAP33076 AC106881.1-201ENST00000605849 3329 ntBASIC16.57■□□□□ 0.24
CIITAP33076 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.57■□□□□ 0.24
CIITAP33076 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CIITAP33076 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 AC136759.1-202ENST00000530858 2194 ntBASIC16.57■□□□□ 0.24
CIITAP33076 AC232323.1-201ENST00000540724 2099 ntBASIC16.57■□□□□ 0.24
CIITAP33076 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.57■□□□□ 0.24
CIITAP33076 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.57■□□□□ 0.24
CIITAP33076 AC138028.6-201ENST00000616106 1482 ntBASIC16.57■□□□□ 0.24
CIITAP33076 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC16.57■□□□□ 0.24
CIITAP33076 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.57■□□□□ 0.24
CIITAP33076 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 AC016700.1-201ENST00000429424 312 ntBASIC16.57■□□□□ 0.24
CIITAP33076 AC099548.2-209ENST00000480264 625 ntBASIC16.57■□□□□ 0.24
CIITAP33076 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC16.57■□□□□ 0.24
CIITAP33076 AC106794.1-201ENST00000506935 792 ntBASIC16.57■□□□□ 0.24
CIITAP33076 MARK2P5-201ENST00000507649 634 ntBASIC16.57■□□□□ 0.24
CIITAP33076 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.57■□□□□ 0.24
CIITAP33076 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.57■□□□□ 0.24
CIITAP33076 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.57■□□□□ 0.24
CIITAP33076 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 AP001267.2-201ENST00000532619 2086 ntBASIC16.57■□□□□ 0.24
CIITAP33076 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CIITAP33076 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.56■□□□□ 0.24
CIITAP33076 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
CIITAP33076 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CIITAP33076 AC015802.1-201ENST00000588104 1449 ntBASIC16.56■□□□□ 0.24
CIITAP33076 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CIITAP33076 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
CIITAP33076 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 AKR7A2P1-201ENST00000460134 915 ntBASIC16.56■□□□□ 0.24
CIITAP33076 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC16.56■□□□□ 0.24
CIITAP33076 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.56■□□□□ 0.24
CIITAP33076 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.56■□□□□ 0.24
CIITAP33076 AC003686.1-201ENST00000550956 1034 ntBASIC16.56■□□□□ 0.24
CIITAP33076 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
CIITAP33076 AC008805.1-201ENST00000590892 364 ntBASIC16.56■□□□□ 0.24
CIITAP33076 AL132994.2-201ENST00000603120 687 ntBASIC16.56■□□□□ 0.24
CIITAP33076 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.56■□□□□ 0.24
CIITAP33076 AC133540.1-201ENST00000620845 1019 ntBASIC16.56■□□□□ 0.24
CIITAP33076 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 AC244452.3-201ENST00000636814 210 ntBASIC16.56■□□□□ 0.24
CIITAP33076 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.56■□□□□ 0.24
CIITAP33076 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.56■□□□□ 0.24
CIITAP33076 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.56■□□□□ 0.24
CIITAP33076 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CIITAP33076 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.56■□□□□ 0.24
CIITAP33076 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.56■□□□□ 0.24
CIITAP33076 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.56■□□□□ 0.24
CIITAP33076 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.56■□□□□ 0.24
CIITAP33076 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.56■□□□□ 0.24
CIITAP33076 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
CIITAP33076 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CIITAP33076 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
CIITAP33076 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms