Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 MTHFR-210ENST00000641407 2387 ntBASIC15.57■□□□□ 0.08
BDNFP23560 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
BDNFP23560 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
BDNFP23560 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
BDNFP23560 MBLAC2-202ENST00000514906 1936 ntBASIC15.57■□□□□ 0.08
BDNFP23560 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.57■□□□□ 0.08
BDNFP23560 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
BDNFP23560 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.57■□□□□ 0.08
BDNFP23560 BCYRN1-201ENST00000418539 200 ntBASIC15.57■□□□□ 0.08
BDNFP23560 AC016700.1-201ENST00000429424 312 ntBASIC15.57■□□□□ 0.08
BDNFP23560 CALR4P-201ENST00000431943 946 ntBASIC15.57■□□□□ 0.08
BDNFP23560 AC012441.2-201ENST00000444843 739 ntBASIC15.57■□□□□ 0.08
BDNFP23560 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.57■□□□□ 0.08
BDNFP23560 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.57■□□□□ 0.08
BDNFP23560 HIST2H2BC-201ENST00000498492 580 ntBASIC15.57■□□□□ 0.08
BDNFP23560 AC106794.1-201ENST00000506935 792 ntBASIC15.57■□□□□ 0.08
BDNFP23560 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 ACTG1P17-201ENST00000558391 1119 ntBASIC15.57■□□□□ 0.08
BDNFP23560 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC15.57■□□□□ 0.08
BDNFP23560 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.57■□□□□ 0.08
BDNFP23560 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC15.57■□□□□ 0.08
BDNFP23560 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
BDNFP23560 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC15.57■□□□□ 0.08
BDNFP23560 AC138649.2-201ENST00000615886 705 ntBASIC15.57■□□□□ 0.08
BDNFP23560 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC15.57■□□□□ 0.08
BDNFP23560 AC068587.8-201ENST00000641239 219 ntBASIC15.57■□□□□ 0.08
BDNFP23560 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 AC006504.5-208ENST00000588784 2401 ntBASIC15.57■□□□□ 0.08
BDNFP23560 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.57■□□□□ 0.08
BDNFP23560 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
BDNFP23560 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
BDNFP23560 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
BDNFP23560 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.56■□□□□ 0.08
BDNFP23560 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
BDNFP23560 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.56■□□□□ 0.08
BDNFP23560 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
BDNFP23560 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
BDNFP23560 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 AL157407.1-201ENST00000435784 904 ntBASIC15.56■□□□□ 0.08
BDNFP23560 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.56■□□□□ 0.08
BDNFP23560 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 AC008805.1-201ENST00000590892 364 ntBASIC15.56■□□□□ 0.08
BDNFP23560 AC009884.2-201ENST00000603110 324 ntBASIC15.56■□□□□ 0.08
BDNFP23560 AC090164.2-201ENST00000611487 516 ntBASIC15.56■□□□□ 0.08
BDNFP23560 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
BDNFP23560 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
BDNFP23560 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.56■□□□□ 0.08
BDNFP23560 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.56■□□□□ 0.08
BDNFP23560 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
BDNFP23560 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.56■□□□□ 0.08
BDNFP23560 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
BDNFP23560 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
BDNFP23560 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
BDNFP23560 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms