Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 PTP4A1P2-201ENST00000546033 454 ntBASIC14.47□□□□□ -0.09
VPS4AQ9UN37 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 DERL2-202ENST00000570848 657 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 RN7SL190P-201ENST00000582519 257 ntBASIC14.47□□□□□ -0.09
VPS4AQ9UN37 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 AL139099.5-201ENST00000635274 300 ntBASIC14.47□□□□□ -0.09
VPS4AQ9UN37 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 RPL7P3-201ENST00000441388 714 ntBASIC14.46□□□□□ -0.09
VPS4AQ9UN37 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 EMC4-209ENST00000559421 497 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 ARL16-210ENST00000574938 751 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 MIR5189-201ENST00000577370 114 ntBASIC14.46□□□□□ -0.09
VPS4AQ9UN37 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 AC018529.2-202ENST00000611482 3087 ntBASIC14.46□□□□□ -0.09
VPS4AQ9UN37 AC018442.1-201ENST00000421439 2061 ntBASIC14.46□□□□□ -0.09
VPS4AQ9UN37 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.46□□□□□ -0.09
VPS4AQ9UN37 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS4AQ9UN37 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS4AQ9UN37 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS4AQ9UN37 LILRP1-201ENST00000444199 1370 ntBASIC14.46□□□□□ -0.1
VPS4AQ9UN37 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
VPS4AQ9UN37 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS4AQ9UN37 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.46□□□□□ -0.1
VPS4AQ9UN37 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.46□□□□□ -0.1
VPS4AQ9UN37 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms