Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.97□□□□□ -0.17
LDB3O75112 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
LDB3O75112 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
LDB3O75112 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.97□□□□□ -0.17
LDB3O75112 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.97□□□□□ -0.17
LDB3O75112 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
LDB3O75112 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.97□□□□□ -0.17
LDB3O75112 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
LDB3O75112 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.97□□□□□ -0.17
LDB3O75112 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.97□□□□□ -0.17
LDB3O75112 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.97□□□□□ -0.17
LDB3O75112 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.97□□□□□ -0.17
LDB3O75112 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.97□□□□□ -0.17
LDB3O75112 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.97□□□□□ -0.17
LDB3O75112 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
LDB3O75112 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.97□□□□□ -0.17
LDB3O75112 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
LDB3O75112 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
LDB3O75112 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.97□□□□□ -0.17
LDB3O75112 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 AP001267.2-201ENST00000532619 2086 ntBASIC13.97□□□□□ -0.17
LDB3O75112 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 MRPL37P1-201ENST00000592451 1337 ntBASIC13.96□□□□□ -0.17
LDB3O75112 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.96□□□□□ -0.17
LDB3O75112 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
LDB3O75112 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.96□□□□□ -0.17
LDB3O75112 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.96□□□□□ -0.17
LDB3O75112 YBX1P6-201ENST00000442962 1002 ntBASIC13.96□□□□□ -0.17
LDB3O75112 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.96□□□□□ -0.17
LDB3O75112 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
LDB3O75112 NAA38-206ENST00000576384 424 ntTSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 MIR4741-201ENST00000579822 90 ntBASIC13.96□□□□□ -0.17
LDB3O75112 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 AL008721.1-201ENST00000609964 604 ntBASIC13.96□□□□□ -0.17
LDB3O75112 ZACNP1-201ENST00000612259 710 ntBASIC13.96□□□□□ -0.17
LDB3O75112 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LDB3O75112 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
LDB3O75112 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.96□□□□□ -0.17
LDB3O75112 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LDB3O75112 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
LDB3O75112 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LDB3O75112 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.96□□□□□ -0.18
LDB3O75112 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LDB3O75112 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.96□□□□□ -0.18
LDB3O75112 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.96□□□□□ -0.18
LDB3O75112 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LDB3O75112 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LDB3O75112 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LDB3O75112 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LDB3O75112 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LDB3O75112 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
LDB3O75112 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.96□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms