Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 AC005089.1-201ENST00000619486 2241 ntBASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 AL136379.1-201ENST00000623471 2642 ntBASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 C2orf69P2-201ENST00000562032 1123 ntBASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 BX088702.1-201ENST00000610784 235 ntBASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 AP001002.3-201ENST00000623482 206 ntBASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 AC015688.4-201ENST00000580780 1647 ntBASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 OR2I1P-209ENST00000641730 5365 ntBASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 MVK-214ENST00000629016 1591 ntTSL 5 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 RGS5-214ENST00000429865 754 ntTSL 3 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 ALG3P1-201ENST00000508806 1114 ntBASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 PPY2P-201ENST00000582808 702 ntBASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMC4Q9NTJ3 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC19.02■□□□□ 0.63
SMC4Q9NTJ3 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.63
SMC4Q9NTJ3 AC006504.5-208ENST00000588784 2401 ntBASIC19.02■□□□□ 0.63
SMC4Q9NTJ3 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC19.02■□□□□ 0.63
SMC4Q9NTJ3 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SMC4Q9NTJ3 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SMC4Q9NTJ3 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
SMC4Q9NTJ3 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 PUDPP3-201ENST00000445368 636 ntBASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 AC119751.2-201ENST00000504529 210 ntBASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 CDC23-208ENST00000505120 455 ntTSL 3 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 AP006547.1-201ENST00000563435 692 ntBASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 AC117489.1-201ENST00000625169 3217 ntBASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SMC4Q9NTJ3 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms