Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC16.94■□□□□ 0.3
SCN4AP35499 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC16.94■□□□□ 0.3
SCN4AP35499 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC16.94■□□□□ 0.3
SCN4AP35499 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC16.94■□□□□ 0.3
SCN4AP35499 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SCN4AP35499 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SCN4AP35499 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.94■□□□□ 0.3
SCN4AP35499 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.94■□□□□ 0.3
SCN4AP35499 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SCN4AP35499 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 MIR611-201ENST00000384869 67 ntBASIC16.93■□□□□ 0.3
SCN4AP35499 DKKL1P1-201ENST00000400550 698 ntBASIC16.93■□□□□ 0.3
SCN4AP35499 FDPSP7-201ENST00000429043 1054 ntBASIC16.93■□□□□ 0.3
SCN4AP35499 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC16.93■□□□□ 0.3
SCN4AP35499 CDK4P1-201ENST00000454213 828 ntBASIC16.93■□□□□ 0.3
SCN4AP35499 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC16.93■□□□□ 0.3
SCN4AP35499 SLC25A15P3-201ENST00000505530 290 ntBASIC16.93■□□□□ 0.3
SCN4AP35499 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC16.93■□□□□ 0.3
SCN4AP35499 AC100858.1-201ENST00000514059 1228 ntBASIC16.93■□□□□ 0.3
SCN4AP35499 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC16.93■□□□□ 0.3
SCN4AP35499 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC16.93■□□□□ 0.3
SCN4AP35499 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC16.93■□□□□ 0.3
SCN4AP35499 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SCN4AP35499 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.93■□□□□ 0.3
SCN4AP35499 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SCN4AP35499 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC16.93■□□□□ 0.3
SCN4AP35499 AC092850.2-201ENST00000623821 2697 ntBASIC16.93■□□□□ 0.3
SCN4AP35499 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
SCN4AP35499 CCT8L1P-201ENST00000465400 1674 ntBASIC16.93■□□□□ 0.3
SCN4AP35499 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SCN4AP35499 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC16.93■□□□□ 0.3
SCN4AP35499 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC16.93■□□□□ 0.3
SCN4AP35499 MAX-218ENST00000557746 571 ntTSL 4 BASIC16.93■□□□□ 0.3
SCN4AP35499 AC091304.3-201ENST00000566500 716 ntBASIC16.93■□□□□ 0.3
SCN4AP35499 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SCN4AP35499 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 AC006986.1-201ENST00000612764 241 ntBASIC16.93■□□□□ 0.3
SCN4AP35499 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.93■□□□□ 0.3
SCN4AP35499 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.93■□□□□ 0.3
SCN4AP35499 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SCN4AP35499 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SCN4AP35499 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
SCN4AP35499 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.92■□□□□ 0.3
SCN4AP35499 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.92■□□□□ 0.3
SCN4AP35499 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
SCN4AP35499 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC16.92■□□□□ 0.3
SCN4AP35499 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.92■□□□□ 0.3
SCN4AP35499 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 AC015688.4-201ENST00000580780 1647 ntBASIC16.92■□□□□ 0.3
SCN4AP35499 AL050341.2-201ENST00000567508 1541 ntBASIC16.92■□□□□ 0.3
SCN4AP35499 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.92■□□□□ 0.3
SCN4AP35499 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 OR2W2P-201ENST00000406313 909 ntBASIC16.92■□□□□ 0.3
SCN4AP35499 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC16.92■□□□□ 0.3
SCN4AP35499 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC16.92■□□□□ 0.3
SCN4AP35499 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC16.92■□□□□ 0.3
SCN4AP35499 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC16.92■□□□□ 0.3
SCN4AP35499 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC16.92■□□□□ 0.3
SCN4AP35499 AC073869.4-201ENST00000620841 800 ntBASIC16.92■□□□□ 0.3
SCN4AP35499 AC026336.4-201ENST00000624565 1050 ntBASIC16.92■□□□□ 0.3
SCN4AP35499 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 BX322534.1-201ENST00000635574 241 ntBASIC16.92■□□□□ 0.3
SCN4AP35499 AC215524.1-201ENST00000635696 241 ntBASIC16.92■□□□□ 0.3
SCN4AP35499 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SCN4AP35499 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms