Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC12.65□□□□□ -0.38
USF1P22415 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 UPF3AP2-201ENST00000457924 1132 ntBASIC12.65□□□□□ -0.38
USF1P22415 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 AC018735.1-201ENST00000437208 1502 ntBASIC12.65□□□□□ -0.38
USF1P22415 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
USF1P22415 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 KRT8P4-201ENST00000509735 1454 ntBASIC12.65□□□□□ -0.38
USF1P22415 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.65□□□□□ -0.39
USF1P22415 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
USF1P22415 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
USF1P22415 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.64□□□□□ -0.39
USF1P22415 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.64□□□□□ -0.39
USF1P22415 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 AC009090.5-201ENST00000624886 2285 ntBASIC12.64□□□□□ -0.39
USF1P22415 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC12.64□□□□□ -0.39
USF1P22415 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC12.64□□□□□ -0.39
USF1P22415 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 RPL5P21-201ENST00000404620 815 ntBASIC12.64□□□□□ -0.39
USF1P22415 POM121L8P-201ENST00000417732 1281 ntBASIC12.64□□□□□ -0.39
USF1P22415 EIF3FP3-201ENST00000434851 1086 ntBASIC12.64□□□□□ -0.39
USF1P22415 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC12.64□□□□□ -0.39
USF1P22415 POM121L9P-203ENST00000441984 1285 ntBASIC12.64□□□□□ -0.39
USF1P22415 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC12.64□□□□□ -0.39
USF1P22415 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 RNF41-210ENST00000552244 716 ntTSL 3 BASIC12.64□□□□□ -0.39
USF1P22415 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC12.64□□□□□ -0.39
USF1P22415 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC12.64□□□□□ -0.39
USF1P22415 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
USF1P22415 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.64□□□□□ -0.39
USF1P22415 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
USF1P22415 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USF1P22415 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.63□□□□□ -0.39
USF1P22415 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
USF1P22415 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
USF1P22415 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
USF1P22415 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
USF1P22415 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
USF1P22415 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
USF1P22415 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
USF1P22415 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.63□□□□□ -0.39
USF1P22415 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
USF1P22415 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
USF1P22415 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC12.63□□□□□ -0.39
USF1P22415 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.63□□□□□ -0.39
USF1P22415 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.63□□□□□ -0.39
USF1P22415 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
USF1P22415 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
USF1P22415 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
USF1P22415 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC12.63□□□□□ -0.39
USF1P22415 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC12.63□□□□□ -0.39
USF1P22415 AL008707.1-201ENST00000422498 534 ntBASIC12.63□□□□□ -0.39
USF1P22415 RGS5-214ENST00000429865 754 ntTSL 3 BASIC12.63□□□□□ -0.39
USF1P22415 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC12.63□□□□□ -0.39
USF1P22415 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC12.63□□□□□ -0.39
USF1P22415 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms