Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
SUMO3P55854 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.43□□□□□ -0.26
SUMO3P55854 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
SUMO3P55854 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
SUMO3P55854 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
SUMO3P55854 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
SUMO3P55854 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
SUMO3P55854 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.42□□□□□ -0.26
SUMO3P55854 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
SUMO3P55854 MIR326-201ENST00000362220 95 ntBASIC13.42□□□□□ -0.26
SUMO3P55854 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.42□□□□□ -0.26
SUMO3P55854 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.42□□□□□ -0.26
SUMO3P55854 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.42□□□□□ -0.26
SUMO3P55854 AC119751.2-201ENST00000504529 210 ntBASIC13.42□□□□□ -0.26
SUMO3P55854 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.42□□□□□ -0.26
SUMO3P55854 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.42□□□□□ -0.26
SUMO3P55854 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.42□□□□□ -0.26
SUMO3P55854 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.42□□□□□ -0.26
SUMO3P55854 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC13.42□□□□□ -0.26
SUMO3P55854 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.42□□□□□ -0.26
SUMO3P55854 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 INTS4P1-203ENST00000641008 3683 ntBASIC13.42□□□□□ -0.26
SUMO3P55854 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
SUMO3P55854 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.42□□□□□ -0.26
SUMO3P55854 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.42□□□□□ -0.26
SUMO3P55854 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 KRT8P28-201ENST00000433288 1390 ntBASIC13.42□□□□□ -0.26
SUMO3P55854 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 AL023775.1-201ENST00000454907 1746 ntBASIC13.42□□□□□ -0.26
SUMO3P55854 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SUMO3P55854 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SUMO3P55854 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.41□□□□□ -0.26
SUMO3P55854 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.41□□□□□ -0.26
SUMO3P55854 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
SUMO3P55854 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.41□□□□□ -0.26
SUMO3P55854 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.41□□□□□ -0.26
SUMO3P55854 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.41□□□□□ -0.26
SUMO3P55854 FAM58BP-201ENST00000439056 645 ntBASIC13.41□□□□□ -0.26
SUMO3P55854 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.41□□□□□ -0.26
SUMO3P55854 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.41□□□□□ -0.26
SUMO3P55854 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.41□□□□□ -0.26
SUMO3P55854 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.41□□□□□ -0.26
SUMO3P55854 IFT20-216ENST00000588477 774 ntTSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.41□□□□□ -0.26
SUMO3P55854 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms