Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL4A4P53420 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL4A4P53420 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
COL4A4P53420 AC106827.1-201ENST00000366454 431 ntBASIC15.47■□□□□ 0.07
COL4A4P53420 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
COL4A4P53420 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.47■□□□□ 0.07
COL4A4P53420 KRT18P46-201ENST00000435568 1279 ntBASIC15.47■□□□□ 0.07
COL4A4P53420 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.47■□□□□ 0.07
COL4A4P53420 TPT1P11-201ENST00000458482 498 ntBASIC15.47■□□□□ 0.07
COL4A4P53420 AC026470.1-201ENST00000478038 846 ntBASIC15.47■□□□□ 0.07
COL4A4P53420 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC15.47■□□□□ 0.07
COL4A4P53420 AL139339.2-201ENST00000608063 657 ntBASIC15.47■□□□□ 0.07
COL4A4P53420 AL118522.1-201ENST00000611368 560 ntBASIC15.47■□□□□ 0.07
COL4A4P53420 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC15.47■□□□□ 0.07
COL4A4P53420 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL4A4P53420 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL4A4P53420 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL4A4P53420 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
COL4A4P53420 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL4A4P53420 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
COL4A4P53420 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.46■□□□□ 0.07
COL4A4P53420 AC092135.3-201ENST00000624151 1846 ntBASIC15.46■□□□□ 0.07
COL4A4P53420 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
COL4A4P53420 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.46■□□□□ 0.07
COL4A4P53420 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.46■□□□□ 0.07
COL4A4P53420 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
COL4A4P53420 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.46■□□□□ 0.07
COL4A4P53420 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC15.46■□□□□ 0.07
COL4A4P53420 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC15.46■□□□□ 0.07
COL4A4P53420 PPIA-208ENST00000489459 907 ntTSL 2 BASIC15.46■□□□□ 0.07
COL4A4P53420 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.46■□□□□ 0.07
COL4A4P53420 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
COL4A4P53420 ABHD17AP9-201ENST00000561925 548 ntBASIC15.46■□□□□ 0.07
COL4A4P53420 HERC2P11-201ENST00000562845 725 ntBASIC15.46■□□□□ 0.07
COL4A4P53420 AC100756.2-201ENST00000569537 736 ntBASIC15.46■□□□□ 0.07
COL4A4P53420 AC055811.3-201ENST00000584952 686 ntBASIC15.46■□□□□ 0.07
COL4A4P53420 AC140113.1-201ENST00000603467 169 ntBASIC15.46■□□□□ 0.07
COL4A4P53420 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 PPIA-210ENST00000620047 827 ntTSL 5 BASIC15.46■□□□□ 0.07
COL4A4P53420 AC018529.2-202ENST00000611482 3087 ntBASIC15.46■□□□□ 0.07
COL4A4P53420 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.46■□□□□ 0.07
COL4A4P53420 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL4A4P53420 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.46■□□□□ 0.07
COL4A4P53420 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.46■□□□□ 0.07
COL4A4P53420 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL4A4P53420 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
COL4A4P53420 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
COL4A4P53420 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL4A4P53420 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
COL4A4P53420 CTBP2P8-201ENST00000422584 1330 ntBASIC15.46■□□□□ 0.06
COL4A4P53420 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
COL4A4P53420 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
COL4A4P53420 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.45■□□□□ 0.06
COL4A4P53420 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.45■□□□□ 0.06
COL4A4P53420 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 SURF4-203ENST00000371991 715 ntTSL 3 BASIC15.45■□□□□ 0.06
COL4A4P53420 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 CELP-201ENST00000411440 1249 ntTSL 5 BASIC15.45■□□□□ 0.06
COL4A4P53420 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.45■□□□□ 0.06
COL4A4P53420 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC15.45■□□□□ 0.06
COL4A4P53420 KRT8P1-201ENST00000557533 1207 ntBASIC15.45■□□□□ 0.06
COL4A4P53420 AC068867.1-201ENST00000559855 150 ntBASIC15.45■□□□□ 0.06
COL4A4P53420 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.45■□□□□ 0.06
COL4A4P53420 ZNF436-AS1-201ENST00000335648 2547 ntBASIC15.45■□□□□ 0.06
COL4A4P53420 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.45■□□□□ 0.06
COL4A4P53420 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 AC025183.3-201ENST00000623526 1482 ntBASIC15.45■□□□□ 0.06
COL4A4P53420 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC15.45■□□□□ 0.06
COL4A4P53420 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
COL4A4P53420 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
COL4A4P53420 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL4A4P53420 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC15.45■□□□□ 0.06
COL4A4P53420 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.45■□□□□ 0.06
COL4A4P53420 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.44■□□□□ 0.06
COL4A4P53420 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
COL4A4P53420 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL4A4P53420 JTB-202ENST00000356648 1040 ntTSL 2 BASIC15.44■□□□□ 0.06
COL4A4P53420 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC15.44■□□□□ 0.06
COL4A4P53420 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL4A4P53420 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC15.44■□□□□ 0.06
COL4A4P53420 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC15.44■□□□□ 0.06
COL4A4P53420 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC15.44■□□□□ 0.06
COL4A4P53420 ELP5-212ENST00000574255 671 ntTSL 2 BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms