Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SOX3P41225 AL645937.2-201ENST00000396808 931 ntBASIC14.09□□□□□ -0.15
SOX3P41225 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.09□□□□□ -0.15
SOX3P41225 ACTBP8-201ENST00000403258 1108 ntBASIC14.09□□□□□ -0.15
SOX3P41225 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.09□□□□□ -0.15
SOX3P41225 AC016694.1-201ENST00000434179 700 ntBASIC14.09□□□□□ -0.15
SOX3P41225 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.09□□□□□ -0.15
SOX3P41225 AC119751.2-201ENST00000504529 210 ntBASIC14.09□□□□□ -0.15
SOX3P41225 MIR4259-201ENST00000584466 101 ntBASIC14.09□□□□□ -0.15
SOX3P41225 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.09□□□□□ -0.15
SOX3P41225 AC133552.6-201ENST00000613406 534 ntBASIC14.09□□□□□ -0.15
SOX3P41225 AC145423.3-201ENST00000615987 467 ntBASIC14.09□□□□□ -0.15
SOX3P41225 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.09□□□□□ -0.15
SOX3P41225 PRSS30P-206ENST00000641773 873 ntBASIC14.09□□□□□ -0.15
SOX3P41225 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SOX3P41225 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.09□□□□□ -0.15
SOX3P41225 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.09□□□□□ -0.15
SOX3P41225 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.09□□□□□ -0.15
SOX3P41225 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SOX3P41225 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.08□□□□□ -0.15
SOX3P41225 PTENP1-202ENST00000532280 3996 ntBASIC14.08□□□□□ -0.15
SOX3P41225 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SOX3P41225 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SOX3P41225 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SOX3P41225 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SOX3P41225 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
SOX3P41225 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
SOX3P41225 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.08□□□□□ -0.16
SOX3P41225 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
SOX3P41225 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
SOX3P41225 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 AC097359.2-201ENST00000604992 2389 ntBASIC14.08□□□□□ -0.16
SOX3P41225 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.08□□□□□ -0.16
SOX3P41225 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.08□□□□□ -0.16
SOX3P41225 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.08□□□□□ -0.16
SOX3P41225 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 AL139094.1-201ENST00000405549 1188 ntBASIC14.08□□□□□ -0.16
SOX3P41225 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.08□□□□□ -0.16
SOX3P41225 C2orf27AP3-201ENST00000434123 579 ntBASIC14.08□□□□□ -0.16
SOX3P41225 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.08□□□□□ -0.16
SOX3P41225 KRT223P-202ENST00000449164 1292 ntBASIC14.08□□□□□ -0.16
SOX3P41225 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.08□□□□□ -0.16
SOX3P41225 AP005482.1-201ENST00000563722 1273 ntBASIC14.08□□□□□ -0.16
SOX3P41225 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.08□□□□□ -0.16
SOX3P41225 AL354718.3-201ENST00000616414 581 ntBASIC14.08□□□□□ -0.16
SOX3P41225 CR382287.1-201ENST00000623954 586 ntBASIC14.08□□□□□ -0.16
SOX3P41225 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.08□□□□□ -0.16
SOX3P41225 COX11-210ENST00000639671 696 ntBASIC14.08□□□□□ -0.16
SOX3P41225 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
SOX3P41225 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
SOX3P41225 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SOX3P41225 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.07□□□□□ -0.16
SOX3P41225 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 LRRC59-203ENST00000576448 1531 ntBASIC14.07□□□□□ -0.16
SOX3P41225 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
SOX3P41225 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms