Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
HTTP42858 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
HTTP42858 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.79
HTTP42858 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC26.2■■□□□ 1.79
HTTP42858 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
HTTP42858 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.2■■□□□ 1.78
HTTP42858 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
HTTP42858 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC26.19■■□□□ 1.78
HTTP42858 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC26.19■■□□□ 1.78
HTTP42858 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
HTTP42858 TSPY26P-201ENST00000476365 1326 ntBASIC26.19■■□□□ 1.78
HTTP42858 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC26.19■■□□□ 1.78
HTTP42858 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC26.19■■□□□ 1.78
HTTP42858 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC26.19■■□□□ 1.78
HTTP42858 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC26.19■■□□□ 1.78
HTTP42858 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
HTTP42858 KRT18P61-201ENST00000585825 1298 ntBASIC26.19■■□□□ 1.78
HTTP42858 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
HTTP42858 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
HTTP42858 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
HTTP42858 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
HTTP42858 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
HTTP42858 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC26.18■■□□□ 1.78
HTTP42858 AC092171.4-201ENST00000609130 632 ntBASIC26.18■■□□□ 1.78
HTTP42858 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
HTTP42858 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.18■■□□□ 1.78
HTTP42858 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
HTTP42858 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC26.17■■□□□ 1.78
HTTP42858 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
HTTP42858 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
HTTP42858 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
HTTP42858 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
HTTP42858 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
HTTP42858 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
HTTP42858 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC26.17■■□□□ 1.78
HTTP42858 MIR3181-201ENST00000578512 73 ntBASIC26.17■■□□□ 1.78
HTTP42858 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC26.16■■□□□ 1.78
HTTP42858 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
HTTP42858 AC104771.1-201ENST00000603335 964 ntBASIC26.16■■□□□ 1.78
HTTP42858 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
HTTP42858 REST-206ENST00000612429 1376 ntTSL 5 BASIC26.16■■□□□ 1.78
HTTP42858 REST-207ENST00000616975 1370 ntTSL 5 BASIC26.16■■□□□ 1.78
HTTP42858 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC26.16■■□□□ 1.78
HTTP42858 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
HTTP42858 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
HTTP42858 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC26.15■■□□□ 1.78
HTTP42858 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC26.15■■□□□ 1.78
HTTP42858 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC26.15■■□□□ 1.78
HTTP42858 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
HTTP42858 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
HTTP42858 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC26.15■■□□□ 1.78
HTTP42858 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
HTTP42858 GXYLT1P5-201ENST00000614548 1189 ntBASIC26.15■■□□□ 1.78
HTTP42858 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
HTTP42858 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
HTTP42858 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
HTTP42858 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
HTTP42858 HES6-206ENST00000409574 738 ntTSL 2 BASIC26.14■■□□□ 1.78
HTTP42858 CDCA4P2-201ENST00000441182 718 ntBASIC26.14■■□□□ 1.78
HTTP42858 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC26.14■■□□□ 1.78
HTTP42858 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.14■■□□□ 1.78
HTTP42858 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
HTTP42858 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
HTTP42858 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
HTTP42858 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC26.14■■□□□ 1.78
HTTP42858 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.14■■□□□ 1.77
HTTP42858 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.13■■□□□ 1.77
HTTP42858 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.13■■□□□ 1.77
HTTP42858 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.13■■□□□ 1.77
HTTP42858 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC26.13■■□□□ 1.77
HTTP42858 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
HTTP42858 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC26.13■■□□□ 1.77
HTTP42858 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
HTTP42858 AC006015.1-201ENST00000429970 570 ntBASIC26.13■■□□□ 1.77
HTTP42858 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC26.13■■□□□ 1.77
HTTP42858 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
HTTP42858 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HTTP42858 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
HTTP42858 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
HTTP42858 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC26.12■■□□□ 1.77
HTTP42858 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC26.12■■□□□ 1.77
HTTP42858 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
HTTP42858 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC26.12■■□□□ 1.77
HTTP42858 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HTTP42858 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC26.12■■□□□ 1.77
HTTP42858 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC26.12■■□□□ 1.77
HTTP42858 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC26.12■■□□□ 1.77
HTTP42858 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HTTP42858 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HTTP42858 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
HTTP42858 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
HTTP42858 BX842568.3-201ENST00000418104 571 ntBASIC26.11■■□□□ 1.77
HTTP42858 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
HTTP42858 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HTTP42858 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HTTP42858 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HTTP42858 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC26.11■■□□□ 1.77
HTTP42858 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HTTP42858 KRT18P14-201ENST00000534205 1250 ntBASIC26.11■■□□□ 1.77
HTTP42858 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms