Protein–RNA interactions for Protein: P35582

Foxa1, Hepatocyte nuclear factor 3-alpha, mousemouse

Predictions only

Length 468 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxa1P35582 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Foxa1P35582 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Foxa1P35582 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Foxa1P35582 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Foxa1P35582 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Foxa1P35582 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Foxa1P35582 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Foxa1P35582 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Foxa1P35582 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.02■□□□□ 0.64
Foxa1P35582 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Foxa1P35582 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Foxa1P35582 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Foxa1P35582 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Foxa1P35582 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Foxa1P35582 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Foxa1P35582 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC19.01■□□□□ 0.63
Foxa1P35582 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC19.01■□□□□ 0.63
Foxa1P35582 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Foxa1P35582 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Foxa1P35582 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Foxa1P35582 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Foxa1P35582 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Foxa1P35582 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19■□□□□ 0.63
Foxa1P35582 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Foxa1P35582 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Foxa1P35582 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC19■□□□□ 0.63
Foxa1P35582 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Foxa1P35582 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Foxa1P35582 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC19■□□□□ 0.63
Foxa1P35582 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Foxa1P35582 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Foxa1P35582 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Foxa1P35582 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
Foxa1P35582 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Foxa1P35582 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Foxa1P35582 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Foxa1P35582 Gm22238-201ENSMUST00000175222 88 ntBASIC18.99■□□□□ 0.63
Foxa1P35582 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.99■□□□□ 0.63
Foxa1P35582 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Foxa1P35582 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.99■□□□□ 0.63
Foxa1P35582 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Foxa1P35582 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Foxa1P35582 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Foxa1P35582 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Foxa1P35582 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Foxa1P35582 Gm6277-202ENSMUST00000224036 2779 ntBASIC18.98■□□□□ 0.63
Foxa1P35582 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Foxa1P35582 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Foxa1P35582 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Foxa1P35582 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Foxa1P35582 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Foxa1P35582 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Foxa1P35582 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Foxa1P35582 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.97■□□□□ 0.63
Foxa1P35582 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Foxa1P35582 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Foxa1P35582 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Foxa1P35582 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Foxa1P35582 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC18.97■□□□□ 0.63
Foxa1P35582 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Foxa1P35582 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Foxa1P35582 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Foxa1P35582 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Foxa1P35582 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Foxa1P35582 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Foxa1P35582 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC18.96■□□□□ 0.63
Foxa1P35582 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Foxa1P35582 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Foxa1P35582 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Foxa1P35582 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.95■□□□□ 0.62
Foxa1P35582 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Foxa1P35582 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Foxa1P35582 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Foxa1P35582 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Foxa1P35582 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
Foxa1P35582 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Foxa1P35582 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Foxa1P35582 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Foxa1P35582 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Foxa1P35582 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.94■□□□□ 0.62
Foxa1P35582 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Foxa1P35582 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Foxa1P35582 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Foxa1P35582 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Foxa1P35582 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Foxa1P35582 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Foxa1P35582 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Foxa1P35582 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Foxa1P35582 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.93■□□□□ 0.62
Foxa1P35582 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Foxa1P35582 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Foxa1P35582 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.93■□□□□ 0.62
Foxa1P35582 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Foxa1P35582 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Foxa1P35582 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Foxa1P35582 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Foxa1P35582 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Foxa1P35582 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Foxa1P35582 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Foxa1P35582 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms