Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.06■□□□□ 0.16
VCPP55072 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.06■□□□□ 0.16
VCPP55072 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.06■□□□□ 0.16
VCPP55072 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.06■□□□□ 0.16
VCPP55072 DRD5P1-201ENST00000456605 1438 ntBASIC16.06■□□□□ 0.16
VCPP55072 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VCPP55072 FTLP1-201ENST00000449155 526 ntBASIC16.06■□□□□ 0.16
VCPP55072 HOMER2P2-201ENST00000451621 847 ntBASIC16.06■□□□□ 0.16
VCPP55072 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.06■□□□□ 0.16
VCPP55072 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 AC025279.2-201ENST00000569730 653 ntBASIC16.06■□□□□ 0.16
VCPP55072 MIR4750-201ENST00000584564 56 ntBASIC16.06■□□□□ 0.16
VCPP55072 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.06■□□□□ 0.16
VCPP55072 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 AL009178.2-201ENST00000597278 2719 ntBASIC16.06■□□□□ 0.16
VCPP55072 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.06■□□□□ 0.16
VCPP55072 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC16.06■□□□□ 0.16
VCPP55072 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
VCPP55072 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.06■□□□□ 0.16
VCPP55072 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VCPP55072 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VCPP55072 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.05■□□□□ 0.16
VCPP55072 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.05■□□□□ 0.16
VCPP55072 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.05■□□□□ 0.16
VCPP55072 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VCPP55072 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.05■□□□□ 0.16
VCPP55072 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VCPP55072 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.05■□□□□ 0.16
VCPP55072 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.05■□□□□ 0.16
VCPP55072 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.05■□□□□ 0.16
VCPP55072 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 CYP46A4P-201ENST00000414953 267 ntBASIC16.05■□□□□ 0.16
VCPP55072 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.05■□□□□ 0.16
VCPP55072 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC16.05■□□□□ 0.16
VCPP55072 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.05■□□□□ 0.16
VCPP55072 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.05■□□□□ 0.16
VCPP55072 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.05■□□□□ 0.16
VCPP55072 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.05■□□□□ 0.16
VCPP55072 CU633904.3-201ENST00000624042 1029 ntBASIC16.05■□□□□ 0.16
VCPP55072 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
VCPP55072 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VCPP55072 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
VCPP55072 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCPP55072 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.05■□□□□ 0.16
VCPP55072 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.05■□□□□ 0.16
VCPP55072 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCPP55072 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VCPP55072 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCPP55072 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
VCPP55072 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCPP55072 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.04■□□□□ 0.16
VCPP55072 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCPP55072 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
VCPP55072 ACE3P-201ENST00000423435 1973 ntBASIC16.04■□□□□ 0.16
VCPP55072 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
VCPP55072 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCPP55072 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.04■□□□□ 0.16
VCPP55072 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.04■□□□□ 0.16
VCPP55072 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.04■□□□□ 0.16
VCPP55072 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.04■□□□□ 0.16
VCPP55072 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VCPP55072 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms